Strain Fitness in Pseudomonas sp. RS175 around PFR28_04770

Experiment: mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_04768 and PFR28_04769 are separated by 143 nucleotidesPFR28_04769 and PFR28_04770 are separated by 88 nucleotidesPFR28_04770 and PFR28_04771 are separated by 31 nucleotides PFR28_04768: PFR28_04768 - Fructose dehydrogenase large subunit, at 5,427,686 to 5,429,905 _04768 PFR28_04769: PFR28_04769 - hypothetical protein, at 5,430,049 to 5,430,573 _04769 PFR28_04770: PFR28_04770 - CRP-like cAMP-activated global transcriptional regulator, at 5,430,662 to 5,431,348 _04770 PFR28_04771: PFR28_04771 - putative HTH-type transcriptional regulator, at 5,431,380 to 5,432,384 _04771 Position (kb) 5430 5431 5432Strain fitness (log2 ratio) -1 0 1at 5429.685 kb on - strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.903 kb on + strandat 5429.925 kb on - strandat 5430.218 kb on + strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.222 kb on - strand, within PFR28_04769at 5430.283 kb on + strand, within PFR28_04769at 5430.284 kb on - strand, within PFR28_04769at 5430.284 kb on - strand, within PFR28_04769at 5430.284 kb on - strand, within PFR28_04769at 5430.284 kb on - strand, within PFR28_04769at 5430.340 kb on + strand, within PFR28_04769at 5430.340 kb on + strand, within PFR28_04769at 5430.341 kb on - strand, within PFR28_04769at 5430.380 kb on + strand, within PFR28_04769at 5430.381 kb on - strand, within PFR28_04769at 5430.533 kb on + strandat 5430.533 kb on + strandat 5430.533 kb on + strandat 5430.533 kb on + strandat 5430.533 kb on + strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.542 kb on + strandat 5430.543 kb on - strandat 5430.543 kb on - strandat 5430.636 kb on + strandat 5430.684 kb on + strandat 5430.684 kb on + strandat 5430.685 kb on - strandat 5430.685 kb on - strandat 5430.685 kb on - strandat 5430.707 kb on + strandat 5430.707 kb on + strandat 5430.729 kb on + strandat 5430.730 kb on - strandat 5430.730 kb on - strandat 5430.737 kb on - strand, within PFR28_04770at 5430.737 kb on - strand, within PFR28_04770at 5430.818 kb on + strand, within PFR28_04770at 5430.818 kb on + strand, within PFR28_04770at 5430.819 kb on - strand, within PFR28_04770at 5430.819 kb on - strand, within PFR28_04770at 5431.032 kb on - strand, within PFR28_04770at 5431.221 kb on + strand, within PFR28_04770at 5431.222 kb on - strand, within PFR28_04770at 5431.892 kb on - strand, within PFR28_04771at 5431.892 kb on - strand, within PFR28_04771at 5431.945 kb on + strand, within PFR28_04771at 5431.945 kb on + strand, within PFR28_04771at 5431.945 kb on + strand, within PFR28_04771at 5431.945 kb on + strand, within PFR28_04771at 5431.945 kb on + strand, within PFR28_04771at 5431.945 kb on + strand, within PFR28_04771at 5431.945 kb on + strand, within PFR28_04771at 5431.945 kb on + strand, within PFR28_04771at 5431.946 kb on - strand, within PFR28_04771at 5431.946 kb on - strand, within PFR28_04771at 5431.946 kb on - strand, within PFR28_04771at 5431.946 kb on - strand, within PFR28_04771at 5431.946 kb on - strand, within PFR28_04771at 5431.946 kb on - strand, within PFR28_04771at 5431.946 kb on - strand, within PFR28_04771at 5431.946 kb on - strand, within PFR28_04771at 5432.077 kb on + strand, within PFR28_04771at 5432.209 kb on - strand, within PFR28_04771

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM
remove
5,429,685 - +0.2
5,429,693 + -0.0
5,429,693 + -0.6
5,429,693 + -0.6
5,429,693 + +1.1
5,429,693 + +0.4
5,429,693 + +1.1
5,429,694 - -0.1
5,429,694 - -0.5
5,429,694 - -0.4
5,429,694 - -0.5
5,429,694 - -0.4
5,429,694 - -0.9
5,429,694 - -0.0
5,429,903 + -0.1
5,429,925 - +0.5
5,430,218 + PFR28_04769 0.32 +0.9
5,430,219 - PFR28_04769 0.32 -0.6
5,430,219 - PFR28_04769 0.32 +0.1
5,430,219 - PFR28_04769 0.32 +0.5
5,430,219 - PFR28_04769 0.32 +0.5
5,430,219 - PFR28_04769 0.32 +1.1
5,430,222 - PFR28_04769 0.33 +0.2
5,430,283 + PFR28_04769 0.45 +0.5
5,430,284 - PFR28_04769 0.45 -0.8
5,430,284 - PFR28_04769 0.45 +0.1
5,430,284 - PFR28_04769 0.45 -0.1
5,430,284 - PFR28_04769 0.45 -0.2
5,430,340 + PFR28_04769 0.55 -0.4
5,430,340 + PFR28_04769 0.55 -0.1
5,430,341 - PFR28_04769 0.56 -0.2
5,430,380 + PFR28_04769 0.63 +0.2
5,430,381 - PFR28_04769 0.63 +0.6
5,430,533 + +0.4
5,430,533 + -1.0
5,430,533 + -0.5
5,430,533 + -1.6
5,430,533 + -0.2
5,430,534 - -1.3
5,430,534 - -0.6
5,430,534 - +0.8
5,430,534 - -0.9
5,430,534 - -0.4
5,430,534 - -1.0
5,430,534 - +1.1
5,430,542 + -0.3
5,430,543 - -0.5
5,430,543 - -0.0
5,430,636 + -1.0
5,430,684 + +0.1
5,430,684 + +0.0
5,430,685 - +0.5
5,430,685 - +0.0
5,430,685 - -0.4
5,430,707 + -0.5
5,430,707 + +1.1
5,430,729 + +0.1
5,430,730 - +0.8
5,430,730 - -0.1
5,430,737 - PFR28_04770 0.11 -0.2
5,430,737 - PFR28_04770 0.11 -0.8
5,430,818 + PFR28_04770 0.23 -0.9
5,430,818 + PFR28_04770 0.23 -0.7
5,430,819 - PFR28_04770 0.23 -0.7
5,430,819 - PFR28_04770 0.23 -0.1
5,431,032 - PFR28_04770 0.54 +0.0
5,431,221 + PFR28_04770 0.81 +1.0
5,431,222 - PFR28_04770 0.82 -0.4
5,431,892 - PFR28_04771 0.51 +1.4
5,431,892 - PFR28_04771 0.51 +0.0
5,431,945 + PFR28_04771 0.56 -0.6
5,431,945 + PFR28_04771 0.56 -1.1
5,431,945 + PFR28_04771 0.56 +0.2
5,431,945 + PFR28_04771 0.56 +0.1
5,431,945 + PFR28_04771 0.56 +0.7
5,431,945 + PFR28_04771 0.56 -0.5
5,431,945 + PFR28_04771 0.56 -1.1
5,431,945 + PFR28_04771 0.56 -0.2
5,431,946 - PFR28_04771 0.56 -0.8
5,431,946 - PFR28_04771 0.56 +0.2
5,431,946 - PFR28_04771 0.56 +0.7
5,431,946 - PFR28_04771 0.56 +0.1
5,431,946 - PFR28_04771 0.56 +1.4
5,431,946 - PFR28_04771 0.56 -0.4
5,431,946 - PFR28_04771 0.56 +0.3
5,431,946 - PFR28_04771 0.56 -0.3
5,432,077 + PFR28_04771 0.69 +0.0
5,432,209 - PFR28_04771 0.82 -0.0

Or see this region's nucleotide sequence