Experiment: mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04799 and PFR28_04800 are separated by 479 nucleotides PFR28_04800 and PFR28_04801 overlap by 4 nucleotides
PFR28_04799: PFR28_04799 - 6-hydroxy-3-succinoylpyridine 3-monooxygenase HspA, at 5,479,350 to 5,480,039
_04799
PFR28_04800: PFR28_04800 - Multidrug resistance protein MdtA, at 5,480,519 to 5,481,298
_04800
PFR28_04801: PFR28_04801 - hypothetical protein, at 5,481,295 to 5,482,614
_04801
Position (kb) 5480
5481
5482 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5479.556 kb on + strand, within PFR28_04799 at 5479.557 kb on - strand, within PFR28_04799 at 5479.651 kb on + strand, within PFR28_04799 at 5479.651 kb on + strand, within PFR28_04799 at 5479.651 kb on + strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.667 kb on + strand, within PFR28_04799 at 5479.667 kb on + strand, within PFR28_04799 at 5479.667 kb on + strand, within PFR28_04799 at 5479.667 kb on + strand, within PFR28_04799 at 5479.668 kb on - strand, within PFR28_04799 at 5479.668 kb on - strand, within PFR28_04799 at 5479.668 kb on - strand, within PFR28_04799 at 5479.668 kb on - strand, within PFR28_04799 at 5479.704 kb on - strand, within PFR28_04799 at 5479.739 kb on + strand, within PFR28_04799 at 5479.740 kb on - strand, within PFR28_04799 at 5479.740 kb on - strand, within PFR28_04799 at 5479.787 kb on - strand, within PFR28_04799 at 5479.812 kb on + strand, within PFR28_04799 at 5479.823 kb on + strand, within PFR28_04799 at 5479.823 kb on + strand, within PFR28_04799 at 5479.823 kb on + strand, within PFR28_04799 at 5479.824 kb on - strand, within PFR28_04799 at 5479.824 kb on - strand, within PFR28_04799 at 5479.824 kb on - strand, within PFR28_04799 at 5479.824 kb on - strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.894 kb on + strand, within PFR28_04799 at 5479.894 kb on + strand, within PFR28_04799 at 5479.894 kb on + strand, within PFR28_04799 at 5479.895 kb on - strand, within PFR28_04799 at 5479.895 kb on - strand, within PFR28_04799 at 5479.895 kb on - strand, within PFR28_04799 at 5479.938 kb on + strand, within PFR28_04799 at 5479.938 kb on + strand, within PFR28_04799 at 5479.939 kb on - strand, within PFR28_04799 at 5479.939 kb on - strand, within PFR28_04799 at 5479.939 kb on - strand, within PFR28_04799 at 5479.950 kb on + strand, within PFR28_04799 at 5479.951 kb on - strand, within PFR28_04799 at 5479.951 kb on - strand, within PFR28_04799 at 5479.951 kb on - strand, within PFR28_04799 at 5479.975 kb on + strand at 5479.975 kb on + strand at 5479.975 kb on + strand at 5479.976 kb on - strand at 5479.976 kb on - strand at 5479.999 kb on + strand at 5479.999 kb on + strand at 5480.000 kb on - strand at 5480.011 kb on + strand at 5480.011 kb on + strand at 5480.011 kb on + strand at 5480.011 kb on + strand at 5480.011 kb on + strand at 5480.012 kb on - strand at 5480.012 kb on - strand at 5480.107 kb on + strand at 5480.107 kb on + strand at 5480.107 kb on + strand at 5480.107 kb on + strand at 5480.144 kb on + strand at 5480.145 kb on - strand at 5480.161 kb on + strand at 5480.161 kb on + strand at 5480.161 kb on + strand at 5480.161 kb on + strand at 5480.161 kb on + strand at 5480.162 kb on - strand at 5480.162 kb on - strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.264 kb on - strand at 5480.264 kb on - strand at 5480.298 kb on + strand at 5480.299 kb on - strand at 5480.299 kb on - strand at 5480.322 kb on + strand at 5480.322 kb on + strand at 5480.323 kb on - strand at 5480.368 kb on + strand at 5480.369 kb on - strand at 5480.389 kb on - strand at 5480.389 kb on - strand at 5480.412 kb on + strand at 5480.413 kb on - strand at 5480.518 kb on + strand at 5480.518 kb on + strand at 5480.534 kb on - strand at 5480.560 kb on - strand at 5480.707 kb on + strand, within PFR28_04800 at 5480.707 kb on + strand, within PFR28_04800 at 5480.708 kb on - strand, within PFR28_04800 at 5480.708 kb on - strand, within PFR28_04800 at 5480.708 kb on - strand, within PFR28_04800 at 5480.783 kb on + strand, within PFR28_04800 at 5480.939 kb on + strand, within PFR28_04800 at 5480.940 kb on - strand, within PFR28_04800 at 5480.940 kb on - strand, within PFR28_04800 at 5481.375 kb on + strand at 5481.376 kb on - strand at 5481.394 kb on + strand at 5481.394 kb on + strand at 5481.394 kb on + strand at 5481.394 kb on + strand at 5481.395 kb on - strand at 5481.446 kb on + strand, within PFR28_04801 at 5481.731 kb on + strand, within PFR28_04801 at 5481.731 kb on + strand, within PFR28_04801 at 5481.731 kb on + strand, within PFR28_04801 at 5481.732 kb on - strand, within PFR28_04801 at 5481.732 kb on - strand, within PFR28_04801 at 5481.732 kb on - strand, within PFR28_04801 at 5481.732 kb on - strand, within PFR28_04801 at 5481.732 kb on - strand, within PFR28_04801 at 5481.732 kb on - strand, within PFR28_04801 at 5481.732 kb on - strand, within PFR28_04801 at 5481.732 kb on - strand, within PFR28_04801 at 5481.754 kb on - strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.757 kb on + strand, within PFR28_04801 at 5481.758 kb on - strand, within PFR28_04801 at 5481.758 kb on - strand, within PFR28_04801 at 5481.758 kb on - strand, within PFR28_04801 at 5481.758 kb on - strand, within PFR28_04801 at 5481.758 kb on - strand, within PFR28_04801 at 5481.758 kb on - strand, within PFR28_04801 at 5481.881 kb on + strand, within PFR28_04801 at 5482.174 kb on + strand, within PFR28_04801 at 5482.174 kb on + strand, within PFR28_04801 at 5482.174 kb on + strand, within PFR28_04801 at 5482.175 kb on - strand, within PFR28_04801 at 5482.175 kb on - strand, within PFR28_04801 at 5482.175 kb on - strand, within PFR28_04801 at 5482.175 kb on - strand, within PFR28_04801 at 5482.175 kb on - strand, within PFR28_04801 at 5482.175 kb on - strand, within PFR28_04801 at 5482.175 kb on - strand, within PFR28_04801
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM remove 5,479,556 + PFR28_04799 0.30 -0.2 5,479,557 - PFR28_04799 0.30 -0.1 5,479,651 + PFR28_04799 0.44 -0.2 5,479,651 + PFR28_04799 0.44 +0.1 5,479,651 + PFR28_04799 0.44 -0.0 5,479,652 - PFR28_04799 0.44 -1.0 5,479,652 - PFR28_04799 0.44 +1.6 5,479,652 - PFR28_04799 0.44 -0.1 5,479,652 - PFR28_04799 0.44 +0.3 5,479,652 - PFR28_04799 0.44 +0.1 5,479,652 - PFR28_04799 0.44 +0.8 5,479,652 - PFR28_04799 0.44 -0.0 5,479,652 - PFR28_04799 0.44 -0.3 5,479,665 + PFR28_04799 0.46 -0.4 5,479,665 + PFR28_04799 0.46 +0.6 5,479,665 + PFR28_04799 0.46 +0.4 5,479,665 + PFR28_04799 0.46 +2.2 5,479,665 + PFR28_04799 0.46 -0.3 5,479,665 + PFR28_04799 0.46 -0.1 5,479,665 + PFR28_04799 0.46 +0.1 5,479,665 + PFR28_04799 0.46 -0.1 5,479,665 + PFR28_04799 0.46 +1.3 5,479,666 - PFR28_04799 0.46 -0.2 5,479,666 - PFR28_04799 0.46 +0.1 5,479,666 - PFR28_04799 0.46 +0.8 5,479,666 - PFR28_04799 0.46 +0.2 5,479,666 - PFR28_04799 0.46 +0.6 5,479,666 - PFR28_04799 0.46 +0.3 5,479,667 + PFR28_04799 0.46 -1.1 5,479,667 + PFR28_04799 0.46 +0.8 5,479,667 + PFR28_04799 0.46 +0.6 5,479,667 + PFR28_04799 0.46 +0.8 5,479,668 - PFR28_04799 0.46 -0.5 5,479,668 - PFR28_04799 0.46 +0.6 5,479,668 - PFR28_04799 0.46 -2.1 5,479,668 - PFR28_04799 0.46 +0.0 5,479,704 - PFR28_04799 0.51 -0.6 5,479,739 + PFR28_04799 0.56 -0.2 5,479,740 - PFR28_04799 0.57 +0.1 5,479,740 - PFR28_04799 0.57 +1.0 5,479,787 - PFR28_04799 0.63 -0.2 5,479,812 + PFR28_04799 0.67 -0.3 5,479,823 + PFR28_04799 0.69 -0.1 5,479,823 + PFR28_04799 0.69 -1.4 5,479,823 + PFR28_04799 0.69 +0.3 5,479,824 - PFR28_04799 0.69 +0.1 5,479,824 - PFR28_04799 0.69 -0.8 5,479,824 - PFR28_04799 0.69 +0.0 5,479,824 - PFR28_04799 0.69 -0.0 5,479,825 + PFR28_04799 0.69 +0.0 5,479,825 + PFR28_04799 0.69 +0.3 5,479,825 + PFR28_04799 0.69 +0.8 5,479,825 + PFR28_04799 0.69 -1.3 5,479,825 + PFR28_04799 0.69 +0.1 5,479,825 + PFR28_04799 0.69 -0.7 5,479,825 + PFR28_04799 0.69 +0.2 5,479,826 - PFR28_04799 0.69 -1.9 5,479,826 - PFR28_04799 0.69 -1.0 5,479,826 - PFR28_04799 0.69 +0.6 5,479,826 - PFR28_04799 0.69 -0.6 5,479,826 - PFR28_04799 0.69 +0.1 5,479,826 - PFR28_04799 0.69 -0.7 5,479,826 - PFR28_04799 0.69 -0.6 5,479,826 - PFR28_04799 0.69 +1.2 5,479,826 - PFR28_04799 0.69 -0.4 5,479,826 - PFR28_04799 0.69 -0.4 5,479,894 + PFR28_04799 0.79 -1.0 5,479,894 + PFR28_04799 0.79 -0.4 5,479,894 + PFR28_04799 0.79 -0.2 5,479,895 - PFR28_04799 0.79 +0.3 5,479,895 - PFR28_04799 0.79 -0.3 5,479,895 - PFR28_04799 0.79 +0.9 5,479,938 + PFR28_04799 0.85 -0.4 5,479,938 + PFR28_04799 0.85 -0.2 5,479,939 - PFR28_04799 0.85 +0.3 5,479,939 - PFR28_04799 0.85 -0.2 5,479,939 - PFR28_04799 0.85 -0.2 5,479,950 + PFR28_04799 0.87 +0.6 5,479,951 - PFR28_04799 0.87 +0.7 5,479,951 - PFR28_04799 0.87 +1.0 5,479,951 - PFR28_04799 0.87 +0.1 5,479,975 + -0.8 5,479,975 + -0.4 5,479,975 + -1.0 5,479,976 - -0.6 5,479,976 - -1.1 5,479,999 + -0.3 5,479,999 + -0.7 5,480,000 - -0.6 5,480,011 + +0.4 5,480,011 + -0.1 5,480,011 + +0.8 5,480,011 + +0.2 5,480,011 + -1.0 5,480,012 - +0.1 5,480,012 - -0.5 5,480,107 + -0.4 5,480,107 + +0.3 5,480,107 + -0.3 5,480,107 + -1.3 5,480,144 + -1.0 5,480,145 - +0.3 5,480,161 + +1.6 5,480,161 + +0.0 5,480,161 + +0.5 5,480,161 + +0.0 5,480,161 + -0.1 5,480,162 - -0.5 5,480,162 - -0.7 5,480,263 + +0.5 5,480,263 + -0.3 5,480,263 + +0.6 5,480,263 + -0.1 5,480,263 + -1.7 5,480,263 + -0.0 5,480,263 + -0.8 5,480,264 - -0.2 5,480,264 - -0.2 5,480,298 + -0.1 5,480,299 - +0.5 5,480,299 - +0.0 5,480,322 + +1.6 5,480,322 + -0.4 5,480,323 - +0.0 5,480,368 + -0.6 5,480,369 - -1.1 5,480,389 - -0.1 5,480,389 - +0.2 5,480,412 + -0.2 5,480,413 - -0.5 5,480,518 + +1.2 5,480,518 + +1.9 5,480,534 - +0.3 5,480,560 - -0.4 5,480,707 + PFR28_04800 0.24 -1.1 5,480,707 + PFR28_04800 0.24 -0.9 5,480,708 - PFR28_04800 0.24 +0.6 5,480,708 - PFR28_04800 0.24 +0.4 5,480,708 - PFR28_04800 0.24 +1.3 5,480,783 + PFR28_04800 0.34 -0.3 5,480,939 + PFR28_04800 0.54 +0.7 5,480,940 - PFR28_04800 0.54 +0.0 5,480,940 - PFR28_04800 0.54 +1.0 5,481,375 + -0.1 5,481,376 - +0.5 5,481,394 + +0.2 5,481,394 + +0.8 5,481,394 + +0.3 5,481,394 + +0.2 5,481,395 - +0.0 5,481,446 + PFR28_04801 0.11 -0.4 5,481,731 + PFR28_04801 0.33 -0.3 5,481,731 + PFR28_04801 0.33 +0.6 5,481,731 + PFR28_04801 0.33 -0.1 5,481,732 - PFR28_04801 0.33 -0.3 5,481,732 - PFR28_04801 0.33 +1.7 5,481,732 - PFR28_04801 0.33 -0.1 5,481,732 - PFR28_04801 0.33 +0.9 5,481,732 - PFR28_04801 0.33 +0.6 5,481,732 - PFR28_04801 0.33 +0.4 5,481,732 - PFR28_04801 0.33 +0.9 5,481,732 - PFR28_04801 0.33 +0.1 5,481,754 - PFR28_04801 0.35 +0.2 5,481,757 + PFR28_04801 0.35 +1.1 5,481,757 + PFR28_04801 0.35 +0.2 5,481,757 + PFR28_04801 0.35 +0.7 5,481,757 + PFR28_04801 0.35 -0.8 5,481,757 + PFR28_04801 0.35 +0.6 5,481,757 + PFR28_04801 0.35 +1.0 5,481,757 + PFR28_04801 0.35 -0.0 5,481,757 + PFR28_04801 0.35 -0.3 5,481,757 + PFR28_04801 0.35 -0.2 5,481,758 - PFR28_04801 0.35 +0.4 5,481,758 - PFR28_04801 0.35 -0.0 5,481,758 - PFR28_04801 0.35 +1.0 5,481,758 - PFR28_04801 0.35 -0.4 5,481,758 - PFR28_04801 0.35 +1.4 5,481,758 - PFR28_04801 0.35 +0.4 5,481,881 + PFR28_04801 0.44 +1.7 5,482,174 + PFR28_04801 0.67 +1.6 5,482,174 + PFR28_04801 0.67 +0.6 5,482,174 + PFR28_04801 0.67 -1.1 5,482,175 - PFR28_04801 0.67 +0.7 5,482,175 - PFR28_04801 0.67 +1.2 5,482,175 - PFR28_04801 0.67 +0.1 5,482,175 - PFR28_04801 0.67 +1.2 5,482,175 - PFR28_04801 0.67 -0.1 5,482,175 - PFR28_04801 0.67 +0.1 5,482,175 - PFR28_04801 0.67 +1.6
Or see this region's nucleotide sequence