Strain Fitness in Pseudomonas sp. RS175 around PFR28_01528

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
1,676,288	+		PFR28_01527	0.16	-0.5
1,676,289	-		PFR28_01527	0.16	-1.0
1,676,337	-		PFR28_01527	0.21	-0.8
1,676,493	-		PFR28_01527	0.35	-1.3
1,676,493	-		PFR28_01527	0.35	-0.3
1,676,675	-		PFR28_01527	0.52	-1.0
1,676,675	-		PFR28_01527	0.52	-0.7
1,676,675	-		PFR28_01527	0.52	-1.3
1,676,726	+		PFR28_01527	0.56	+0.7
1,676,774	+		PFR28_01527	0.61	+0.7
1,676,775	-		PFR28_01527	0.61	-0.3
1,676,775	-		PFR28_01527	0.61	-1.3
1,676,859	-		PFR28_01527	0.68	+0.5
1,676,925	-		PFR28_01527	0.74	-1.1
1,676,925	-		PFR28_01527	0.74	-1.4
1,676,969	+		PFR28_01527	0.78	+0.7
1,676,970	-		PFR28_01527	0.79	+1.7
1,676,970	-		PFR28_01527	0.79	+0.7
1,676,970	-		PFR28_01527	0.79	-0.8
1,676,970	-		PFR28_01527	0.79	-0.1
1,676,970	-		PFR28_01527	0.79	-0.8
1,676,970	-		PFR28_01527	0.79	+1.2
1,676,970	-		PFR28_01527	0.79	+1.7
1,676,970	-		PFR28_01527	0.79	-1.4
1,676,977	-		PFR28_01527	0.79	-0.8
1,676,977	-		PFR28_01527	0.79	-1.9
1,677,186	-				+1.2
1,677,186	-				-0.5
1,677,186	-				-0.3
1,677,186	-				+1.3
1,677,203	+				-0.1
1,677,204	-				-0.3
1,677,248	+				-0.2
1,677,249	-				-0.3
1,677,321	-				-0.3
1,677,321	-				-0.3
1,677,553	-		PFR28_01528	0.23	-1.2
1,677,553	-		PFR28_01528	0.23	+0.5
1,677,618	+		PFR28_01528	0.29	-0.8
1,677,619	-		PFR28_01528	0.29	-0.3
1,677,619	-		PFR28_01528	0.29	-0.0
1,677,619	-		PFR28_01528	0.29	+1.2
1,677,619	-		PFR28_01528	0.29	-0.3
1,677,619	-		PFR28_01528	0.29	-0.4
1,677,729	+		PFR28_01528	0.38	-0.3
1,677,729	+		PFR28_01528	0.38	-2.2
1,677,729	+		PFR28_01528	0.38	+0.2
1,677,729	+		PFR28_01528	0.38	-1.8
1,677,729	+		PFR28_01528	0.38	+0.3
1,677,730	-		PFR28_01528	0.38	-0.9
1,677,730	-		PFR28_01528	0.38	-0.6
1,677,730	-		PFR28_01528	0.38	-0.4
1,677,730	-		PFR28_01528	0.38	-0.7
1,677,730	-		PFR28_01528	0.38	-0.1
1,677,789	+		PFR28_01528	0.43	-2.0
1,677,789	+		PFR28_01528	0.43	-0.4
1,677,790	-		PFR28_01528	0.43	+2.3
1,677,790	-		PFR28_01528	0.43	-1.1
1,677,937	-		PFR28_01528	0.55	-1.0
1,678,023	+		PFR28_01528	0.63	-1.3
1,678,023	+		PFR28_01528	0.63	-0.7
1,678,023	+		PFR28_01528	0.63	-1.6
1,678,024	-		PFR28_01528	0.63	-0.1
1,678,024	-		PFR28_01528	0.63	-0.8
1,678,118	-		PFR28_01528	0.71	+0.7
1,678,118	-		PFR28_01528	0.71	-0.7
1,678,233	+		PFR28_01528	0.80	+0.4
1,678,234	-		PFR28_01528	0.80	-1.6
1,678,234	-		PFR28_01528	0.80	+0.7
1,678,234	-		PFR28_01528	0.80	-1.3
1,678,234	-		PFR28_01528	0.80	-0.8
1,678,234	-		PFR28_01528	0.80	-0.6
1,678,234	-		PFR28_01528	0.80	+0.7
1,678,234	-		PFR28_01528	0.80	+0.3
1,678,234	-		PFR28_01528	0.80	+1.2
1,678,261	-		PFR28_01528	0.83	-1.4
1,678,290	+		PFR28_01528	0.85	-0.3
1,678,290	+		PFR28_01528	0.85	-0.6
1,678,291	-		PFR28_01528	0.85	+1.2
1,678,292	+		PFR28_01528	0.85	-0.1
1,678,664	+		PFR28_01529	0.10	-0.6
1,678,664	+		PFR28_01529	0.10	+0.8
1,678,664	+		PFR28_01529	0.10	+0.1
1,678,664	+		PFR28_01529	0.10	-1.8
1,678,665	-		PFR28_01529	0.10	-0.4
1,678,894	+		PFR28_01529	0.36	+0.7
1,678,894	+		PFR28_01529	0.36	-0.4
1,678,894	+		PFR28_01529	0.36	-0.6
1,678,894	+		PFR28_01529	0.36	-0.1
1,678,895	-		PFR28_01529	0.36	+1.2
1,678,997	+		PFR28_01529	0.47	-0.7
1,678,998	-		PFR28_01529	0.47	+0.1
1,679,098	+		PFR28_01529	0.58	+0.4
1,679,117	+		PFR28_01529	0.60	-0.0
1,679,117	+		PFR28_01529	0.60	-0.3
1,679,117	+		PFR28_01529	0.60	-0.3
1,679,117	+		PFR28_01529	0.60	-0.1
1,679,117	+		PFR28_01529	0.60	-1.2
1,679,117	+		PFR28_01529	0.60	-0.4
1,679,118	-		PFR28_01529	0.60	-0.1
1,679,118	-		PFR28_01529	0.60	-0.6
1,679,220	+		PFR28_01529	0.72	+0.5
1,679,221	-		PFR28_01529	0.72	-0.4
1,679,221	-		PFR28_01529	0.72	+0.1
1,679,265	-		PFR28_01529	0.77	-0.0