Strain Fitness in Pseudomonas sp. RS175 around PFR28_01526

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
1,673,538	+		PFR28_01525	0.11	+0.5
1,673,538	+		PFR28_01525	0.11	+0.3
1,673,847	+		PFR28_01525	0.40	-0.3
1,673,880	+		PFR28_01525	0.44	-0.3
1,673,881	-		PFR28_01525	0.44	+0.4
1,673,920	+		PFR28_01525	0.47	+0.1
1,673,920	+		PFR28_01525	0.47	+0.0
1,673,921	-		PFR28_01525	0.48	-0.3
1,673,921	-		PFR28_01525	0.48	-0.3
1,674,003	+		PFR28_01525	0.55	+1.0
1,674,067	+		PFR28_01525	0.61	-0.8
1,674,067	+		PFR28_01525	0.61	+0.4
1,674,067	+		PFR28_01525	0.61	-0.7
1,674,259	+		PFR28_01525	0.80	+1.5
1,674,259	+		PFR28_01525	0.80	-0.4
1,674,260	-		PFR28_01525	0.80	-0.7
1,674,296	-		PFR28_01525	0.83	+0.6
1,674,332	-		PFR28_01525	0.87	+0.1
1,674,334	+		PFR28_01525	0.87	+0.4
1,674,334	+		PFR28_01525	0.87	-0.1
1,674,335	-		PFR28_01525	0.87	+1.5
1,674,460	+				-0.1
1,674,550	+				-0.4
1,674,550	+				-0.3
1,674,550	+				+0.7
1,674,550	+				+0.7
1,674,550	+				+0.6
1,674,658	+				-0.4
1,674,820	+		PFR28_01526	0.21	-0.3
1,674,821	-		PFR28_01526	0.21	-0.3
1,674,821	-		PFR28_01526	0.21	+0.0
1,674,835	-		PFR28_01526	0.23	-0.5
1,674,904	+		PFR28_01526	0.28	+0.6
1,674,905	-		PFR28_01526	0.28	+1.7
1,674,905	-		PFR28_01526	0.28	-0.4
1,674,905	-		PFR28_01526	0.28	+0.7
1,674,922	+		PFR28_01526	0.29	-1.0
1,674,922	+		PFR28_01526	0.29	+1.1
1,674,923	-		PFR28_01526	0.29	-0.2
1,675,318	+		PFR28_01526	0.59	+0.1
1,675,318	+		PFR28_01526	0.59	-0.1
1,675,446	+		PFR28_01526	0.68	+0.9
1,675,470	+		PFR28_01526	0.70	+0.2
1,675,470	+		PFR28_01526	0.70	+0.0
1,675,470	+		PFR28_01526	0.70	-0.0
1,675,470	+		PFR28_01526	0.70	+0.4
1,675,470	+		PFR28_01526	0.70	-0.3
1,675,470	+		PFR28_01526	0.70	-0.3
1,675,470	+		PFR28_01526	0.70	-0.8
1,675,471	-		PFR28_01526	0.70	-0.5
1,675,471	-		PFR28_01526	0.70	+0.2
1,675,471	-		PFR28_01526	0.70	+0.3
1,675,471	-		PFR28_01526	0.70	-0.5
1,675,471	-		PFR28_01526	0.70	+1.0
1,675,471	-		PFR28_01526	0.70	+1.3
1,675,471	-		PFR28_01526	0.70	+0.7
1,675,471	-		PFR28_01526	0.70	-2.4
1,675,471	-		PFR28_01526	0.70	-0.8
1,675,642	+		PFR28_01526	0.83	+1.1
1,675,642	+		PFR28_01526	0.83	-1.3
1,675,642	+		PFR28_01526	0.83	+0.1
1,675,642	+		PFR28_01526	0.83	+0.2
1,675,643	-		PFR28_01526	0.83	+0.7
1,675,643	-		PFR28_01526	0.83	+0.3
1,675,643	-		PFR28_01526	0.83	-0.7
1,675,643	-		PFR28_01526	0.83	+0.1
1,675,643	-		PFR28_01526	0.83	+0.5
1,675,643	-		PFR28_01526	0.83	+0.3
1,675,675	+		PFR28_01526	0.86	-0.0
1,675,676	-		PFR28_01526	0.86	+0.3
1,675,786	+				-0.2
1,675,848	-				-0.1
1,675,848	-				-0.1
1,675,848	-				+0.9
1,675,916	+				-0.4
1,676,123	+				-1.3
1,676,124	-				+0.4
1,676,124	-				+0.2
1,676,124	-				-0.3
1,676,124	-				+0.2
1,676,126	+				+1.3
1,676,127	-				-0.1
1,676,127	-				-0.3
1,676,127	-				-0.4
1,676,127	-				-0.5
1,676,127	-				-0.4
1,676,258	+		PFR28_01527	0.14	-0.8
1,676,258	+		PFR28_01527	0.14	-0.8
1,676,259	-		PFR28_01527	0.14	-0.5
1,676,259	-		PFR28_01527	0.14	-1.2
1,676,259	-		PFR28_01527	0.14	-1.6
1,676,259	-		PFR28_01527	0.14	-1.3
1,676,288	+		PFR28_01527	0.16	-0.5
1,676,289	-		PFR28_01527	0.16	-1.0
1,676,337	-		PFR28_01527	0.21	-0.8
1,676,493	-		PFR28_01527	0.35	-1.3
1,676,493	-		PFR28_01527	0.35	-0.3
1,676,675	-		PFR28_01527	0.52	-1.0
1,676,675	-		PFR28_01527	0.52	-0.7
1,676,675	-		PFR28_01527	0.52	-1.3
1,676,726	+		PFR28_01527	0.56	+0.7
1,676,774	+		PFR28_01527	0.61	+0.7
1,676,775	-		PFR28_01527	0.61	-0.3
1,676,775	-		PFR28_01527	0.61	-1.3
1,676,859	-		PFR28_01527	0.68	+0.5