Strain Fitness in Pseudomonas sp. RS175 around PFR28_04253

Experiment: mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM
4,855,101	-				+0.4
4,855,174	+				-0.6
4,855,174	+				-0.2
4,855,174	+				+1.4
4,855,174	+				+0.2
4,855,174	+				-0.2
4,855,174	+				+0.7
4,855,174	+				-1.2
4,855,174	+				-0.2
4,855,175	-				+0.5
4,855,175	-				+0.5
4,855,175	-				-0.2
4,855,175	-				+1.4
4,855,175	-				+0.6
4,855,175	-				+0.9
4,855,175	-				+1.0
4,855,214	-				-4.0
4,855,243	+				-3.2
4,855,244	-				-2.1
4,855,244	-				-0.4
4,855,441	+		PFR28_04252	0.34	-2.7
4,855,441	+		PFR28_04252	0.34	-3.7
4,855,441	+		PFR28_04252	0.34	-4.5
4,855,441	+		PFR28_04252	0.34	-4.5
4,855,441	+		PFR28_04252	0.34	-0.7
4,855,441	+		PFR28_04252	0.34	-3.1
4,855,441	+		PFR28_04252	0.34	-2.7
4,855,441	+		PFR28_04252	0.34	-4.1
4,855,442	-		PFR28_04252	0.34	-3.7
4,855,442	-		PFR28_04252	0.34	-2.9
4,855,442	-		PFR28_04252	0.34	-1.7
4,855,442	-		PFR28_04252	0.34	-3.8
4,855,442	-		PFR28_04252	0.34	-4.2
4,855,442	-		PFR28_04252	0.34	-4.0
4,855,442	-		PFR28_04252	0.34	-2.4
4,855,549	+		PFR28_04252	0.47	-3.9
4,855,549	+		PFR28_04252	0.47	-2.8
4,855,549	+		PFR28_04252	0.47	-3.9
4,855,550	-		PFR28_04252	0.47	-2.4
4,855,550	-		PFR28_04252	0.47	-3.2
4,855,550	-		PFR28_04252	0.47	-1.7
4,855,550	-		PFR28_04252	0.47	-3.9
4,855,751	-		PFR28_04252	0.73	-4.9
4,855,751	-		PFR28_04252	0.73	-2.9
4,855,885	+		PFR28_04252	0.90	-3.7
4,855,918	+				-2.4
4,855,919	-				-3.6
4,855,919	-				-3.9
4,855,919	-				-4.4
4,855,922	+				-1.4
4,855,922	+				-1.7
4,855,923	-				-3.1
4,856,142	-		PFR28_04253	0.39	-1.7
4,856,295	+				-2.9
4,856,295	+				+0.1
4,856,295	+				-0.1
4,856,295	+				-0.9
4,856,296	-				-1.9
4,856,461	+		PFR28_04254	0.30	-0.1
4,856,462	-		PFR28_04254	0.30	-0.1
4,856,462	-		PFR28_04254	0.30	-0.4
4,856,462	-		PFR28_04254	0.30	-0.1
4,856,534	+		PFR28_04254	0.50	-0.1
4,856,587	+		PFR28_04254	0.64	-0.4
4,856,587	+		PFR28_04254	0.64	-0.4
4,856,587	+		PFR28_04254	0.64	-0.1
4,856,587	+		PFR28_04254	0.64	-0.4
4,856,588	-		PFR28_04254	0.64	+1.1
4,856,588	-		PFR28_04254	0.64	+0.9
4,856,588	-		PFR28_04254	0.64	-0.9
4,856,618	-		PFR28_04254	0.72	-1.9
4,856,618	-		PFR28_04254	0.72	-0.9
4,856,711	+				-0.2
4,856,711	+				-0.2
4,856,712	-				-0.9
4,856,712	-				-0.4
4,856,712	-				+0.1
4,856,755	+				+0.0
4,856,755	+				+1.4
4,856,755	+				+0.3
4,856,755	+				-0.7
4,856,755	+				+1.6
4,856,755	+				-0.0
4,856,755	+				-0.3
4,856,755	+				-0.1
4,856,755	+				+0.1
4,856,755	+				+0.6
4,856,755	+				-0.4
4,856,755	+				+1.2
4,856,755	+				-0.4
4,856,755	+				-1.4
4,856,755	+				+0.3
4,856,755	+				-0.5
4,856,756	-				-0.6
4,856,756	-				-0.7
4,856,756	-				+0.2
4,856,756	-				-0.8
4,856,756	-				-0.2
4,856,756	-				-0.5
4,856,756	-				+0.1
4,856,756	-				-0.5
4,856,756	-				+0.0
4,856,756	-				+1.0
4,856,756	-				-0.1
4,856,756	-				-0.2
4,856,756	-				-0.0
4,856,756	-				+0.3
4,856,756	-				-0.5
4,856,756	-				-1.4
4,856,756	-				-0.4
4,856,757	+				-0.6
4,856,757	+				-0.8
4,856,757	+				-0.5
4,856,757	+				+0.3
4,856,758	-				+0.1
4,856,758	-				-1.4
4,856,758	-				+1.5
4,856,758	-				-0.2
4,856,758	-				+0.1
4,856,793	+				+1.0
4,857,084	+		PFR28_04255	0.40	+0.3
4,857,084	+		PFR28_04255	0.40	+1.0
4,857,085	-		PFR28_04255	0.40	-1.2
4,857,085	-		PFR28_04255	0.40	+0.4
4,857,085	-		PFR28_04255	0.40	-0.4
4,857,247	+		PFR28_04255	0.63	+0.1
4,857,247	+		PFR28_04255	0.63	-0.5
4,857,248	-		PFR28_04255	0.63	+0.0
4,857,248	-		PFR28_04255	0.63	-0.6