Experiment: Trisodium citrate 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04945 and PFR28_04946 are separated by 231 nucleotides PFR28_04946 and PFR28_04947 overlap by 4 nucleotides PFR28_04947 and PFR28_04948 are separated by 104 nucleotides
PFR28_04945: PFR28_04945 - Sensory histidine kinase/phosphatase NtrB, at 5,636,383 to 5,637,468
_04945
PFR28_04946: PFR28_04946 - hypothetical protein, at 5,637,700 to 5,638,320
_04946
PFR28_04947: PFR28_04947 - hypothetical protein, at 5,638,317 to 5,638,835
_04947
PFR28_04948: PFR28_04948 - hypothetical protein, at 5,638,940 to 5,639,548
_04948
Position (kb) 5637
5638
5639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5636.789 kb on + strand, within PFR28_04945 at 5636.790 kb on - strand, within PFR28_04945 at 5636.960 kb on + strand, within PFR28_04945 at 5636.960 kb on + strand, within PFR28_04945 at 5636.960 kb on + strand, within PFR28_04945 at 5636.960 kb on + strand, within PFR28_04945 at 5636.960 kb on + strand, within PFR28_04945 at 5636.961 kb on - strand, within PFR28_04945 at 5636.961 kb on - strand, within PFR28_04945 at 5636.961 kb on - strand, within PFR28_04945 at 5637.112 kb on - strand, within PFR28_04945 at 5637.380 kb on + strand at 5637.380 kb on + strand at 5637.380 kb on + strand at 5637.380 kb on + strand at 5637.380 kb on + strand at 5637.380 kb on + strand at 5637.380 kb on + strand at 5637.381 kb on - strand at 5637.381 kb on - strand at 5637.381 kb on - strand at 5637.381 kb on - strand at 5637.381 kb on - strand at 5637.381 kb on - strand at 5637.381 kb on - strand at 5637.381 kb on - strand at 5637.381 kb on - strand at 5637.436 kb on + strand at 5637.448 kb on + strand at 5637.448 kb on + strand at 5637.448 kb on + strand at 5637.449 kb on - strand at 5637.449 kb on - strand at 5637.449 kb on - strand at 5637.488 kb on + strand at 5637.488 kb on + strand at 5637.488 kb on + strand at 5637.561 kb on + strand at 5637.666 kb on - strand at 5637.676 kb on + strand at 5637.677 kb on - strand at 5637.677 kb on - strand at 5637.678 kb on + strand at 5637.678 kb on + strand at 5637.678 kb on + strand at 5637.679 kb on - strand at 5637.770 kb on + strand, within PFR28_04946 at 5637.770 kb on + strand, within PFR28_04946 at 5637.770 kb on + strand, within PFR28_04946 at 5637.828 kb on + strand, within PFR28_04946 at 5637.828 kb on + strand, within PFR28_04946 at 5637.828 kb on + strand, within PFR28_04946 at 5637.828 kb on + strand, within PFR28_04946 at 5637.861 kb on + strand, within PFR28_04946 at 5637.862 kb on - strand, within PFR28_04946 at 5637.862 kb on - strand, within PFR28_04946 at 5638.017 kb on + strand, within PFR28_04946 at 5638.017 kb on + strand, within PFR28_04946 at 5638.017 kb on + strand, within PFR28_04946 at 5638.018 kb on - strand, within PFR28_04946 at 5638.078 kb on + strand, within PFR28_04946 at 5638.079 kb on - strand, within PFR28_04946 at 5638.079 kb on - strand, within PFR28_04946 at 5638.095 kb on - strand, within PFR28_04946 at 5638.095 kb on - strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.250 kb on + strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.251 kb on - strand, within PFR28_04946 at 5638.256 kb on + strand, within PFR28_04946 at 5638.256 kb on + strand, within PFR28_04946 at 5638.256 kb on + strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.257 kb on - strand, within PFR28_04946 at 5638.338 kb on + strand at 5638.339 kb on - strand at 5638.339 kb on - strand at 5638.424 kb on + strand, within PFR28_04947 at 5638.424 kb on + strand, within PFR28_04947 at 5638.446 kb on + strand, within PFR28_04947 at 5638.603 kb on + strand, within PFR28_04947 at 5638.604 kb on - strand, within PFR28_04947 at 5638.604 kb on - strand, within PFR28_04947 at 5638.676 kb on + strand, within PFR28_04947 at 5638.676 kb on + strand, within PFR28_04947 at 5638.739 kb on - strand, within PFR28_04947 at 5638.739 kb on - strand, within PFR28_04947 at 5638.739 kb on - strand, within PFR28_04947 at 5638.739 kb on - strand, within PFR28_04947 at 5638.739 kb on - strand, within PFR28_04947 at 5638.765 kb on + strand, within PFR28_04947 at 5638.765 kb on + strand, within PFR28_04947 at 5638.765 kb on + strand, within PFR28_04947 at 5638.765 kb on + strand, within PFR28_04947 at 5638.765 kb on + strand, within PFR28_04947 at 5638.765 kb on + strand, within PFR28_04947 at 5638.766 kb on - strand, within PFR28_04947 at 5638.766 kb on - strand, within PFR28_04947 at 5638.766 kb on - strand, within PFR28_04947 at 5638.766 kb on - strand, within PFR28_04947 at 5638.766 kb on - strand, within PFR28_04947 at 5638.766 kb on - strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.771 kb on + strand, within PFR28_04947 at 5638.772 kb on - strand, within PFR28_04947 at 5638.772 kb on - strand, within PFR28_04947 at 5638.836 kb on - strand at 5638.858 kb on + strand at 5638.858 kb on + strand at 5638.859 kb on - strand at 5638.873 kb on + strand at 5638.873 kb on + strand at 5638.873 kb on + strand at 5638.873 kb on + strand at 5638.874 kb on - strand at 5638.874 kb on - strand at 5638.874 kb on - strand at 5638.874 kb on - strand at 5638.874 kb on - strand at 5638.874 kb on - strand at 5638.874 kb on - strand at 5638.941 kb on + strand at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.199 kb on + strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.200 kb on - strand, within PFR28_04948 at 5639.222 kb on + strand, within PFR28_04948 at 5639.222 kb on + strand, within PFR28_04948 at 5639.222 kb on + strand, within PFR28_04948 at 5639.223 kb on - strand, within PFR28_04948 at 5639.223 kb on - strand, within PFR28_04948 at 5639.223 kb on - strand, within PFR28_04948 at 5639.223 kb on - strand, within PFR28_04948 at 5639.269 kb on - strand, within PFR28_04948 at 5639.269 kb on - strand, within PFR28_04948
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate 10 mM (C) remove 5,636,789 + PFR28_04945 0.37 -1.4 5,636,790 - PFR28_04945 0.37 -0.4 5,636,960 + PFR28_04945 0.53 -1.0 5,636,960 + PFR28_04945 0.53 -1.9 5,636,960 + PFR28_04945 0.53 -3.2 5,636,960 + PFR28_04945 0.53 -3.1 5,636,960 + PFR28_04945 0.53 +0.0 5,636,961 - PFR28_04945 0.53 -2.9 5,636,961 - PFR28_04945 0.53 -2.0 5,636,961 - PFR28_04945 0.53 -2.4 5,637,112 - PFR28_04945 0.67 -1.0 5,637,380 + -2.4 5,637,380 + -1.7 5,637,380 + -1.9 5,637,380 + -3.2 5,637,380 + -2.0 5,637,380 + -3.7 5,637,380 + -2.0 5,637,381 - -1.1 5,637,381 - -0.8 5,637,381 - -0.6 5,637,381 - -1.9 5,637,381 - -1.4 5,637,381 - -0.7 5,637,381 - -1.8 5,637,381 - -0.8 5,637,381 - -1.1 5,637,436 + -0.3 5,637,448 + -0.4 5,637,448 + -0.0 5,637,448 + -0.3 5,637,449 - -0.1 5,637,449 - -1.6 5,637,449 - -0.4 5,637,488 + -1.4 5,637,488 + -0.8 5,637,488 + -0.2 5,637,561 + +0.0 5,637,666 - -0.6 5,637,676 + +0.1 5,637,677 - -1.2 5,637,677 - -0.4 5,637,678 + -0.7 5,637,678 + -0.3 5,637,678 + +0.6 5,637,679 - -2.2 5,637,770 + PFR28_04946 0.11 -0.5 5,637,770 + PFR28_04946 0.11 -0.5 5,637,770 + PFR28_04946 0.11 -0.1 5,637,828 + PFR28_04946 0.21 -1.0 5,637,828 + PFR28_04946 0.21 +0.3 5,637,828 + PFR28_04946 0.21 -0.1 5,637,828 + PFR28_04946 0.21 +0.9 5,637,861 + PFR28_04946 0.26 +1.0 5,637,862 - PFR28_04946 0.26 +0.4 5,637,862 - PFR28_04946 0.26 -2.6 5,638,017 + PFR28_04946 0.51 +0.1 5,638,017 + PFR28_04946 0.51 +0.9 5,638,017 + PFR28_04946 0.51 +0.6 5,638,018 - PFR28_04946 0.51 -0.1 5,638,078 + PFR28_04946 0.61 -0.1 5,638,079 - PFR28_04946 0.61 -0.0 5,638,079 - PFR28_04946 0.61 +0.2 5,638,095 - PFR28_04946 0.64 +1.3 5,638,095 - PFR28_04946 0.64 +1.2 5,638,250 + PFR28_04946 0.89 -0.1 5,638,250 + PFR28_04946 0.89 +1.4 5,638,250 + PFR28_04946 0.89 +1.1 5,638,250 + PFR28_04946 0.89 -0.7 5,638,250 + PFR28_04946 0.89 +0.3 5,638,250 + PFR28_04946 0.89 +0.0 5,638,250 + PFR28_04946 0.89 +0.6 5,638,250 + PFR28_04946 0.89 -0.2 5,638,250 + PFR28_04946 0.89 +0.9 5,638,250 + PFR28_04946 0.89 -0.1 5,638,250 + PFR28_04946 0.89 -0.7 5,638,250 + PFR28_04946 0.89 +1.0 5,638,250 + PFR28_04946 0.89 +0.6 5,638,250 + PFR28_04946 0.89 -0.0 5,638,250 + PFR28_04946 0.89 -0.0 5,638,250 + PFR28_04946 0.89 -0.4 5,638,250 + PFR28_04946 0.89 +2.9 5,638,250 + PFR28_04946 0.89 -0.4 5,638,250 + PFR28_04946 0.89 -0.3 5,638,251 - PFR28_04946 0.89 -0.2 5,638,251 - PFR28_04946 0.89 +0.3 5,638,251 - PFR28_04946 0.89 -0.1 5,638,251 - PFR28_04946 0.89 +1.2 5,638,251 - PFR28_04946 0.89 -0.4 5,638,251 - PFR28_04946 0.89 -2.6 5,638,251 - PFR28_04946 0.89 +0.7 5,638,251 - PFR28_04946 0.89 +0.0 5,638,251 - PFR28_04946 0.89 -0.1 5,638,251 - PFR28_04946 0.89 -1.3 5,638,251 - PFR28_04946 0.89 -0.1 5,638,251 - PFR28_04946 0.89 +1.4 5,638,251 - PFR28_04946 0.89 +2.0 5,638,251 - PFR28_04946 0.89 -0.3 5,638,251 - PFR28_04946 0.89 -2.6 5,638,251 - PFR28_04946 0.89 -0.7 5,638,256 + PFR28_04946 0.90 -0.3 5,638,256 + PFR28_04946 0.90 +0.7 5,638,256 + PFR28_04946 0.90 +0.3 5,638,257 - PFR28_04946 0.90 +0.2 5,638,257 - PFR28_04946 0.90 +0.2 5,638,257 - PFR28_04946 0.90 +1.3 5,638,257 - PFR28_04946 0.90 -0.8 5,638,257 - PFR28_04946 0.90 -0.6 5,638,257 - PFR28_04946 0.90 +0.3 5,638,257 - PFR28_04946 0.90 +0.5 5,638,257 - PFR28_04946 0.90 -0.5 5,638,257 - PFR28_04946 0.90 -0.5 5,638,257 - PFR28_04946 0.90 +0.1 5,638,257 - PFR28_04946 0.90 -0.7 5,638,257 - PFR28_04946 0.90 +0.2 5,638,338 + +0.2 5,638,339 - +0.2 5,638,339 - -0.1 5,638,424 + PFR28_04947 0.21 -0.4 5,638,424 + PFR28_04947 0.21 +0.4 5,638,446 + PFR28_04947 0.25 -0.2 5,638,603 + PFR28_04947 0.55 -2.7 5,638,604 - PFR28_04947 0.55 -0.9 5,638,604 - PFR28_04947 0.55 -0.9 5,638,676 + PFR28_04947 0.69 +0.9 5,638,676 + PFR28_04947 0.69 -0.2 5,638,739 - PFR28_04947 0.81 -0.3 5,638,739 - PFR28_04947 0.81 +0.3 5,638,739 - PFR28_04947 0.81 -1.0 5,638,739 - PFR28_04947 0.81 +1.3 5,638,739 - PFR28_04947 0.81 -1.2 5,638,765 + PFR28_04947 0.86 -0.2 5,638,765 + PFR28_04947 0.86 +0.9 5,638,765 + PFR28_04947 0.86 +0.2 5,638,765 + PFR28_04947 0.86 -0.3 5,638,765 + PFR28_04947 0.86 -0.2 5,638,765 + PFR28_04947 0.86 +0.0 5,638,766 - PFR28_04947 0.87 -0.7 5,638,766 - PFR28_04947 0.87 -0.5 5,638,766 - PFR28_04947 0.87 +0.7 5,638,766 - PFR28_04947 0.87 -2.7 5,638,766 - PFR28_04947 0.87 -0.1 5,638,766 - PFR28_04947 0.87 -0.7 5,638,771 + PFR28_04947 0.87 -0.4 5,638,771 + PFR28_04947 0.87 -0.2 5,638,771 + PFR28_04947 0.87 +0.0 5,638,771 + PFR28_04947 0.87 -0.3 5,638,771 + PFR28_04947 0.87 -0.4 5,638,771 + PFR28_04947 0.87 -1.4 5,638,771 + PFR28_04947 0.87 -0.2 5,638,771 + PFR28_04947 0.87 +0.6 5,638,771 + PFR28_04947 0.87 -1.2 5,638,772 - PFR28_04947 0.88 -0.9 5,638,772 - PFR28_04947 0.88 -0.5 5,638,836 - -0.4 5,638,858 + -0.2 5,638,858 + -1.4 5,638,859 - -0.0 5,638,873 + -0.2 5,638,873 + -0.8 5,638,873 + +0.3 5,638,873 + +0.3 5,638,874 - +0.8 5,638,874 - +0.6 5,638,874 - +0.6 5,638,874 - -0.0 5,638,874 - -0.2 5,638,874 - -0.1 5,638,874 - +0.1 5,638,941 + -0.7 5,639,199 + PFR28_04948 0.43 -0.7 5,639,199 + PFR28_04948 0.43 +1.2 5,639,199 + PFR28_04948 0.43 +0.4 5,639,199 + PFR28_04948 0.43 -0.7 5,639,199 + PFR28_04948 0.43 +1.6 5,639,199 + PFR28_04948 0.43 -0.3 5,639,199 + PFR28_04948 0.43 -0.6 5,639,199 + PFR28_04948 0.43 +0.4 5,639,199 + PFR28_04948 0.43 -1.1 5,639,199 + PFR28_04948 0.43 +0.1 5,639,200 - PFR28_04948 0.43 -1.4 5,639,200 - PFR28_04948 0.43 -0.2 5,639,200 - PFR28_04948 0.43 +0.1 5,639,200 - PFR28_04948 0.43 -0.1 5,639,200 - PFR28_04948 0.43 -0.0 5,639,200 - PFR28_04948 0.43 -0.5 5,639,200 - PFR28_04948 0.43 -0.7 5,639,200 - PFR28_04948 0.43 -1.2 5,639,200 - PFR28_04948 0.43 -1.0 5,639,200 - PFR28_04948 0.43 -1.0 5,639,200 - PFR28_04948 0.43 +0.7 5,639,200 - PFR28_04948 0.43 -0.2 5,639,200 - PFR28_04948 0.43 +1.4 5,639,200 - PFR28_04948 0.43 +2.2 5,639,222 + PFR28_04948 0.46 -0.9 5,639,222 + PFR28_04948 0.46 +0.1 5,639,222 + PFR28_04948 0.46 +0.0 5,639,223 - PFR28_04948 0.46 -0.1 5,639,223 - PFR28_04948 0.46 -3.0 5,639,223 - PFR28_04948 0.46 -0.1 5,639,223 - PFR28_04948 0.46 +0.0 5,639,269 - PFR28_04948 0.54 +1.0 5,639,269 - PFR28_04948 0.54 +0.4
Or see this region's nucleotide sequence