Strain Fitness in Pseudomonas sp. RS175 around PFR28_04718

Experiment: Trisodium citrate 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04717 and PFR28_04718 overlap by 4 nucleotidesPFR28_04718 and PFR28_04719 are separated by 26 nucleotidesPFR28_04719 and PFR28_04720 are separated by 105 nucleotides PFR28_04717: PFR28_04717 - hypothetical protein, at 5,372,483 to 5,374,444 _04717 PFR28_04718: PFR28_04718 - hypothetical protein, at 5,374,441 to 5,374,761 _04718 PFR28_04719: PFR28_04719 - hypothetical protein, at 5,374,788 to 5,375,096 _04719 PFR28_04720: PFR28_04720 - hypothetical protein, at 5,375,202 to 5,375,519 _04720 Position (kb) 5374 5375Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5373.588 kb on + strand, within PFR28_04717at 5373.601 kb on - strand, within PFR28_04717at 5373.685 kb on + strand, within PFR28_04717at 5373.686 kb on - strand, within PFR28_04717at 5373.686 kb on - strand, within PFR28_04717at 5373.723 kb on + strand, within PFR28_04717at 5373.723 kb on + strand, within PFR28_04717at 5373.724 kb on - strand, within PFR28_04717at 5373.726 kb on + strand, within PFR28_04717at 5373.726 kb on + strand, within PFR28_04717at 5373.726 kb on + strand, within PFR28_04717at 5373.756 kb on + strand, within PFR28_04717at 5373.756 kb on + strand, within PFR28_04717at 5373.756 kb on + strand, within PFR28_04717at 5373.756 kb on + strand, within PFR28_04717at 5373.756 kb on + strand, within PFR28_04717at 5373.757 kb on - strand, within PFR28_04717at 5373.757 kb on - strand, within PFR28_04717at 5373.757 kb on - strand, within PFR28_04717at 5373.777 kb on + strand, within PFR28_04717at 5373.777 kb on + strand, within PFR28_04717at 5373.777 kb on + strand, within PFR28_04717at 5373.777 kb on + strand, within PFR28_04717at 5373.777 kb on + strand, within PFR28_04717at 5373.777 kb on + strand, within PFR28_04717at 5373.778 kb on - strand, within PFR28_04717at 5373.778 kb on - strand, within PFR28_04717at 5373.822 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.885 kb on + strand, within PFR28_04717at 5373.886 kb on - strand, within PFR28_04717at 5373.886 kb on - strand, within PFR28_04717at 5373.886 kb on - strand, within PFR28_04717at 5373.886 kb on - strand, within PFR28_04717at 5373.886 kb on - strand, within PFR28_04717at 5373.886 kb on - strand, within PFR28_04717at 5373.934 kb on + strand, within PFR28_04717at 5374.007 kb on - strand, within PFR28_04717at 5374.059 kb on + strand, within PFR28_04717at 5374.059 kb on + strand, within PFR28_04717at 5374.059 kb on + strand, within PFR28_04717at 5374.059 kb on + strand, within PFR28_04717at 5374.059 kb on + strand, within PFR28_04717at 5374.060 kb on - strand, within PFR28_04717at 5374.060 kb on - strand, within PFR28_04717at 5374.060 kb on - strand, within PFR28_04717at 5374.060 kb on - strand, within PFR28_04717at 5374.060 kb on - strand, within PFR28_04717at 5374.060 kb on - strand, within PFR28_04717at 5374.063 kb on + strand, within PFR28_04717at 5374.063 kb on + strand, within PFR28_04717at 5374.063 kb on + strand, within PFR28_04717at 5374.063 kb on + strand, within PFR28_04717at 5374.063 kb on + strand, within PFR28_04717at 5374.063 kb on + strand, within PFR28_04717at 5374.063 kb on + strand, within PFR28_04717at 5374.064 kb on - strand, within PFR28_04717at 5374.064 kb on - strand, within PFR28_04717at 5374.064 kb on - strand, within PFR28_04717at 5374.064 kb on - strand, within PFR28_04717at 5374.064 kb on - strand, within PFR28_04717at 5374.064 kb on - strand, within PFR28_04717at 5374.064 kb on - strand, within PFR28_04717at 5374.215 kb on + strand, within PFR28_04717at 5374.215 kb on + strand, within PFR28_04717at 5374.215 kb on + strand, within PFR28_04717at 5374.357 kb on + strandat 5374.677 kb on + strand, within PFR28_04718at 5374.677 kb on + strand, within PFR28_04718at 5374.677 kb on + strand, within PFR28_04718at 5374.678 kb on - strand, within PFR28_04718at 5374.687 kb on + strand, within PFR28_04718at 5374.687 kb on + strand, within PFR28_04718at 5374.696 kb on - strand, within PFR28_04718at 5374.696 kb on - strand, within PFR28_04718at 5374.696 kb on - strand, within PFR28_04718at 5374.721 kb on - strand, within PFR28_04718at 5374.779 kb on + strandat 5374.779 kb on + strandat 5374.779 kb on + strandat 5374.780 kb on - strandat 5374.780 kb on - strandat 5374.780 kb on - strandat 5374.780 kb on - strandat 5374.789 kb on + strandat 5374.789 kb on + strandat 5374.789 kb on + strandat 5374.790 kb on - strandat 5374.790 kb on - strandat 5374.790 kb on - strandat 5374.858 kb on + strand, within PFR28_04719at 5374.944 kb on + strand, within PFR28_04719at 5374.945 kb on - strand, within PFR28_04719at 5374.950 kb on - strand, within PFR28_04719at 5375.198 kb on + strandat 5375.198 kb on + strandat 5375.198 kb on + strandat 5375.198 kb on + strandat 5375.198 kb on + strandat 5375.199 kb on - strandat 5375.199 kb on - strandat 5375.199 kb on - strandat 5375.214 kb on + strandat 5375.272 kb on + strand, within PFR28_04720at 5375.272 kb on + strand, within PFR28_04720at 5375.272 kb on + strand, within PFR28_04720at 5375.272 kb on + strand, within PFR28_04720at 5375.272 kb on + strand, within PFR28_04720at 5375.272 kb on + strand, within PFR28_04720at 5375.272 kb on + strand, within PFR28_04720at 5375.273 kb on - strand, within PFR28_04720at 5375.273 kb on - strand, within PFR28_04720at 5375.273 kb on - strand, within PFR28_04720at 5375.273 kb on - strand, within PFR28_04720at 5375.425 kb on - strand, within PFR28_04720at 5375.559 kb on + strandat 5375.559 kb on + strandat 5375.560 kb on - strandat 5375.560 kb on - strandat 5375.560 kb on - strandat 5375.607 kb on - strandat 5375.607 kb on - strandat 5375.609 kb on + strandat 5375.609 kb on + strandat 5375.609 kb on + strandat 5375.609 kb on + strandat 5375.610 kb on - strandat 5375.610 kb on - strandat 5375.610 kb on - strandat 5375.610 kb on - strandat 5375.656 kb on + strandat 5375.657 kb on - strandat 5375.657 kb on - strandat 5375.657 kb on - strandat 5375.657 kb on - strandat 5375.657 kb on - strandat 5375.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate 10 mM (C)
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5,373,588 + PFR28_04717 0.56 -0.6
5,373,601 - PFR28_04717 0.57 +0.7
5,373,685 + PFR28_04717 0.61 +0.2
5,373,686 - PFR28_04717 0.61 -1.8
5,373,686 - PFR28_04717 0.61 +1.0
5,373,723 + PFR28_04717 0.63 +0.5
5,373,723 + PFR28_04717 0.63 -1.5
5,373,724 - PFR28_04717 0.63 -0.3
5,373,726 + PFR28_04717 0.63 -0.1
5,373,726 + PFR28_04717 0.63 -0.4
5,373,726 + PFR28_04717 0.63 +0.1
5,373,756 + PFR28_04717 0.65 +0.7
5,373,756 + PFR28_04717 0.65 -0.5
5,373,756 + PFR28_04717 0.65 -0.2
5,373,756 + PFR28_04717 0.65 +0.9
5,373,756 + PFR28_04717 0.65 -0.5
5,373,757 - PFR28_04717 0.65 -0.4
5,373,757 - PFR28_04717 0.65 +0.8
5,373,757 - PFR28_04717 0.65 -0.4
5,373,777 + PFR28_04717 0.66 +1.3
5,373,777 + PFR28_04717 0.66 +0.2
5,373,777 + PFR28_04717 0.66 -1.0
5,373,777 + PFR28_04717 0.66 +0.2
5,373,777 + PFR28_04717 0.66 +2.8
5,373,777 + PFR28_04717 0.66 -0.0
5,373,778 - PFR28_04717 0.66 -0.2
5,373,778 - PFR28_04717 0.66 +0.4
5,373,822 + PFR28_04717 0.68 -0.1
5,373,885 + PFR28_04717 0.71 +0.4
5,373,885 + PFR28_04717 0.71 +0.7
5,373,885 + PFR28_04717 0.71 +0.4
5,373,885 + PFR28_04717 0.71 +0.3
5,373,885 + PFR28_04717 0.71 +0.0
5,373,885 + PFR28_04717 0.71 +1.0
5,373,885 + PFR28_04717 0.71 +0.9
5,373,885 + PFR28_04717 0.71 -0.7
5,373,885 + PFR28_04717 0.71 -0.4
5,373,885 + PFR28_04717 0.71 -0.8
5,373,886 - PFR28_04717 0.72 -0.2
5,373,886 - PFR28_04717 0.72 -0.9
5,373,886 - PFR28_04717 0.72 +0.2
5,373,886 - PFR28_04717 0.72 -0.6
5,373,886 - PFR28_04717 0.72 -0.1
5,373,886 - PFR28_04717 0.72 +0.9
5,373,934 + PFR28_04717 0.74 -0.3
5,374,007 - PFR28_04717 0.78 -0.2
5,374,059 + PFR28_04717 0.80 +0.9
5,374,059 + PFR28_04717 0.80 -0.0
5,374,059 + PFR28_04717 0.80 +0.0
5,374,059 + PFR28_04717 0.80 +0.6
5,374,059 + PFR28_04717 0.80 -0.5
5,374,060 - PFR28_04717 0.80 -0.4
5,374,060 - PFR28_04717 0.80 +0.6
5,374,060 - PFR28_04717 0.80 -0.1
5,374,060 - PFR28_04717 0.80 -0.6
5,374,060 - PFR28_04717 0.80 -0.7
5,374,060 - PFR28_04717 0.80 -1.0
5,374,063 + PFR28_04717 0.81 +1.0
5,374,063 + PFR28_04717 0.81 +0.2
5,374,063 + PFR28_04717 0.81 -0.5
5,374,063 + PFR28_04717 0.81 -0.5
5,374,063 + PFR28_04717 0.81 -1.0
5,374,063 + PFR28_04717 0.81 +0.3
5,374,063 + PFR28_04717 0.81 -0.1
5,374,064 - PFR28_04717 0.81 +0.2
5,374,064 - PFR28_04717 0.81 +0.2
5,374,064 - PFR28_04717 0.81 -0.5
5,374,064 - PFR28_04717 0.81 -0.6
5,374,064 - PFR28_04717 0.81 -0.3
5,374,064 - PFR28_04717 0.81 +0.5
5,374,064 - PFR28_04717 0.81 -0.3
5,374,215 + PFR28_04717 0.88 +0.4
5,374,215 + PFR28_04717 0.88 +0.4
5,374,215 + PFR28_04717 0.88 -0.1
5,374,357 + +0.1
5,374,677 + PFR28_04718 0.74 -1.0
5,374,677 + PFR28_04718 0.74 +0.3
5,374,677 + PFR28_04718 0.74 -1.6
5,374,678 - PFR28_04718 0.74 +1.0
5,374,687 + PFR28_04718 0.77 -0.1
5,374,687 + PFR28_04718 0.77 -1.4
5,374,696 - PFR28_04718 0.79 -0.3
5,374,696 - PFR28_04718 0.79 -0.2
5,374,696 - PFR28_04718 0.79 -0.3
5,374,721 - PFR28_04718 0.87 -0.4
5,374,779 + +2.2
5,374,779 + +0.3
5,374,779 + -0.3
5,374,780 - +0.1
5,374,780 - -0.1
5,374,780 - +1.4
5,374,780 - +0.0
5,374,789 + +0.6
5,374,789 + +0.2
5,374,789 + +0.2
5,374,790 - +0.2
5,374,790 - +0.0
5,374,790 - -0.2
5,374,858 + PFR28_04719 0.23 -0.9
5,374,944 + PFR28_04719 0.50 -0.1
5,374,945 - PFR28_04719 0.51 -0.7
5,374,950 - PFR28_04719 0.52 -1.4
5,375,198 + -0.1
5,375,198 + +0.6
5,375,198 + +0.2
5,375,198 + -0.3
5,375,198 + +0.3
5,375,199 - -0.1
5,375,199 - +0.2
5,375,199 - -0.6
5,375,214 + -0.3
5,375,272 + PFR28_04720 0.22 -0.9
5,375,272 + PFR28_04720 0.22 +0.1
5,375,272 + PFR28_04720 0.22 +0.1
5,375,272 + PFR28_04720 0.22 -0.2
5,375,272 + PFR28_04720 0.22 +0.2
5,375,272 + PFR28_04720 0.22 +0.0
5,375,272 + PFR28_04720 0.22 -0.1
5,375,273 - PFR28_04720 0.22 -2.7
5,375,273 - PFR28_04720 0.22 +0.2
5,375,273 - PFR28_04720 0.22 -0.0
5,375,273 - PFR28_04720 0.22 +0.2
5,375,425 - PFR28_04720 0.70 -0.4
5,375,559 + +0.1
5,375,559 + +0.0
5,375,560 - -0.1
5,375,560 - +0.4
5,375,560 - -0.2
5,375,607 - +0.2
5,375,607 - +0.2
5,375,609 + -0.4
5,375,609 + +1.1
5,375,609 + -0.3
5,375,609 + -0.5
5,375,610 - -0.5
5,375,610 - +0.9
5,375,610 - +0.4
5,375,610 - +0.8
5,375,656 + -0.4
5,375,657 - +0.2
5,375,657 - -0.6
5,375,657 - -0.5
5,375,657 - +1.0
5,375,657 - -0.4
5,375,679 - -0.0

Or see this region's nucleotide sequence