Strain Fitness in Erwinia amylovora T8 around OLJFJH_05045

Experiment: Matrix:KB soft agar;Phage:PBS;Temp:28;Samp:32-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05040 and OLJFJH_05045 are separated by 180 nucleotidesOLJFJH_05045 and OLJFJH_05050 overlap by 49 nucleotides OLJFJH_05040: OLJFJH_05040 - aspartate aminotransferase family protein, at 1,000,595 to 1,001,935 _05040 OLJFJH_05045: OLJFJH_05045 - DeoR/GlpR transcriptional regulator, at 1,002,116 to 1,002,910 _05045 OLJFJH_05050: OLJFJH_05050 - formate dehydrogenase accessory sulfurtransferase FdhD, at 1,002,862 to 1,003,719 _05050 Position (kb) 1002 1003Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1001.159 kb on + strand, within OLJFJH_05040at 1001.160 kb on - strand, within OLJFJH_05040at 1001.196 kb on - strand, within OLJFJH_05040at 1001.196 kb on - strand, within OLJFJH_05040at 1001.196 kb on - strand, within OLJFJH_05040at 1001.196 kb on - strand, within OLJFJH_05040at 1001.305 kb on + strand, within OLJFJH_05040at 1001.469 kb on + strand, within OLJFJH_05040at 1001.469 kb on + strand, within OLJFJH_05040at 1001.509 kb on - strand, within OLJFJH_05040at 1001.509 kb on - strand, within OLJFJH_05040at 1001.509 kb on - strand, within OLJFJH_05040at 1001.562 kb on + strand, within OLJFJH_05040at 1001.562 kb on + strand, within OLJFJH_05040at 1001.562 kb on + strand, within OLJFJH_05040at 1001.562 kb on + strand, within OLJFJH_05040at 1001.562 kb on + strand, within OLJFJH_05040at 1001.562 kb on + strand, within OLJFJH_05040at 1001.562 kb on + strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.563 kb on - strand, within OLJFJH_05040at 1001.726 kb on - strand, within OLJFJH_05040at 1001.727 kb on + strand, within OLJFJH_05040at 1001.727 kb on + strand, within OLJFJH_05040at 1001.727 kb on + strand, within OLJFJH_05040at 1001.727 kb on + strand, within OLJFJH_05040at 1001.728 kb on - strand, within OLJFJH_05040at 1001.728 kb on - strand, within OLJFJH_05040at 1001.728 kb on - strand, within OLJFJH_05040at 1001.728 kb on - strand, within OLJFJH_05040at 1001.728 kb on - strand, within OLJFJH_05040at 1001.728 kb on - strand, within OLJFJH_05040at 1001.739 kb on + strand, within OLJFJH_05040at 1001.739 kb on + strand, within OLJFJH_05040at 1001.739 kb on + strand, within OLJFJH_05040at 1001.739 kb on + strand, within OLJFJH_05040at 1001.740 kb on - strand, within OLJFJH_05040at 1001.743 kb on + strand, within OLJFJH_05040at 1001.743 kb on + strand, within OLJFJH_05040at 1001.744 kb on - strand, within OLJFJH_05040at 1001.744 kb on - strand, within OLJFJH_05040at 1001.744 kb on - strand, within OLJFJH_05040at 1001.744 kb on - strand, within OLJFJH_05040at 1001.766 kb on + strand, within OLJFJH_05040at 1001.918 kb on - strandat 1001.918 kb on - strandat 1001.918 kb on - strandat 1002.078 kb on - strandat 1002.116 kb on - strandat 1002.116 kb on - strandat 1002.135 kb on + strandat 1002.135 kb on + strandat 1002.135 kb on + strandat 1002.136 kb on - strandat 1002.136 kb on - strandat 1002.232 kb on + strand, within OLJFJH_05045at 1002.232 kb on + strand, within OLJFJH_05045at 1002.232 kb on + strand, within OLJFJH_05045at 1002.233 kb on - strand, within OLJFJH_05045at 1002.233 kb on - strand, within OLJFJH_05045at 1002.235 kb on + strand, within OLJFJH_05045at 1002.236 kb on - strand, within OLJFJH_05045at 1002.236 kb on - strand, within OLJFJH_05045at 1002.418 kb on + strand, within OLJFJH_05045at 1002.758 kb on - strand, within OLJFJH_05045at 1002.785 kb on + strand, within OLJFJH_05045at 1002.785 kb on + strand, within OLJFJH_05045at 1002.786 kb on - strand, within OLJFJH_05045at 1002.786 kb on - strand, within OLJFJH_05045at 1002.786 kb on - strand, within OLJFJH_05045at 1002.913 kb on - strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.914 kb on + strandat 1002.915 kb on - strandat 1002.915 kb on - strandat 1002.915 kb on - strandat 1002.915 kb on - strandat 1002.915 kb on - strandat 1002.915 kb on - strandat 1002.915 kb on - strandat 1003.046 kb on - strand, within OLJFJH_05050at 1003.249 kb on + strand, within OLJFJH_05050at 1003.250 kb on - strand, within OLJFJH_05050at 1003.461 kb on + strand, within OLJFJH_05050at 1003.473 kb on - strand, within OLJFJH_05050at 1003.473 kb on - strand, within OLJFJH_05050at 1003.494 kb on + strand, within OLJFJH_05050at 1003.580 kb on + strand, within OLJFJH_05050at 1003.580 kb on + strand, within OLJFJH_05050at 1003.580 kb on + strand, within OLJFJH_05050at 1003.581 kb on - strand, within OLJFJH_05050at 1003.772 kb on - strandat 1003.841 kb on + strandat 1003.841 kb on + strandat 1003.858 kb on + strandat 1003.859 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:PBS;Temp:28;Samp:32-1
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1,001,159 + OLJFJH_05040 0.42 +0.4
1,001,160 - OLJFJH_05040 0.42 -0.3
1,001,196 - OLJFJH_05040 0.45 -0.6
1,001,196 - OLJFJH_05040 0.45 -0.5
1,001,196 - OLJFJH_05040 0.45 -0.3
1,001,196 - OLJFJH_05040 0.45 -0.4
1,001,305 + OLJFJH_05040 0.53 -0.3
1,001,469 + OLJFJH_05040 0.65 +0.0
1,001,469 + OLJFJH_05040 0.65 -0.8
1,001,509 - OLJFJH_05040 0.68 +0.2
1,001,509 - OLJFJH_05040 0.68 +0.1
1,001,509 - OLJFJH_05040 0.68 +0.0
1,001,562 + OLJFJH_05040 0.72 -0.9
1,001,562 + OLJFJH_05040 0.72 +0.1
1,001,562 + OLJFJH_05040 0.72 -0.1
1,001,562 + OLJFJH_05040 0.72 -0.4
1,001,562 + OLJFJH_05040 0.72 +0.0
1,001,562 + OLJFJH_05040 0.72 +0.8
1,001,562 + OLJFJH_05040 0.72 -0.4
1,001,563 - OLJFJH_05040 0.72 +0.4
1,001,563 - OLJFJH_05040 0.72 -0.6
1,001,563 - OLJFJH_05040 0.72 -0.5
1,001,563 - OLJFJH_05040 0.72 -1.2
1,001,563 - OLJFJH_05040 0.72 -2.3
1,001,563 - OLJFJH_05040 0.72 +0.1
1,001,563 - OLJFJH_05040 0.72 +0.4
1,001,563 - OLJFJH_05040 0.72 -1.2
1,001,563 - OLJFJH_05040 0.72 -0.8
1,001,563 - OLJFJH_05040 0.72 -0.4
1,001,563 - OLJFJH_05040 0.72 -0.7
1,001,726 - OLJFJH_05040 0.84 -0.3
1,001,727 + OLJFJH_05040 0.84 -0.1
1,001,727 + OLJFJH_05040 0.84 -0.4
1,001,727 + OLJFJH_05040 0.84 -0.3
1,001,727 + OLJFJH_05040 0.84 +0.1
1,001,728 - OLJFJH_05040 0.84 -0.2
1,001,728 - OLJFJH_05040 0.84 +0.2
1,001,728 - OLJFJH_05040 0.84 -0.2
1,001,728 - OLJFJH_05040 0.84 -0.2
1,001,728 - OLJFJH_05040 0.84 +0.4
1,001,728 - OLJFJH_05040 0.84 -0.4
1,001,739 + OLJFJH_05040 0.85 +0.1
1,001,739 + OLJFJH_05040 0.85 +1.2
1,001,739 + OLJFJH_05040 0.85 -0.4
1,001,739 + OLJFJH_05040 0.85 -0.0
1,001,740 - OLJFJH_05040 0.85 +0.2
1,001,743 + OLJFJH_05040 0.86 -2.7
1,001,743 + OLJFJH_05040 0.86 -0.6
1,001,744 - OLJFJH_05040 0.86 -0.3
1,001,744 - OLJFJH_05040 0.86 +0.6
1,001,744 - OLJFJH_05040 0.86 -0.5
1,001,744 - OLJFJH_05040 0.86 -0.0
1,001,766 + OLJFJH_05040 0.87 +0.1
1,001,918 - +3.3
1,001,918 - -1.3
1,001,918 - +0.2
1,002,078 - -0.7
1,002,116 - +0.0
1,002,116 - -0.6
1,002,135 + -1.7
1,002,135 + -1.2
1,002,135 + -1.7
1,002,136 - -2.1
1,002,136 - -0.9
1,002,232 + OLJFJH_05045 0.15 -1.5
1,002,232 + OLJFJH_05045 0.15 -1.4
1,002,232 + OLJFJH_05045 0.15 -1.5
1,002,233 - OLJFJH_05045 0.15 -1.6
1,002,233 - OLJFJH_05045 0.15 -1.5
1,002,235 + OLJFJH_05045 0.15 -1.7
1,002,236 - OLJFJH_05045 0.15 -0.4
1,002,236 - OLJFJH_05045 0.15 -1.9
1,002,418 + OLJFJH_05045 0.38 -2.1
1,002,758 - OLJFJH_05045 0.81 -1.3
1,002,785 + OLJFJH_05045 0.84 -0.8
1,002,785 + OLJFJH_05045 0.84 -0.6
1,002,786 - OLJFJH_05045 0.84 -2.7
1,002,786 - OLJFJH_05045 0.84 -1.2
1,002,786 - OLJFJH_05045 0.84 -2.0
1,002,913 - -0.3
1,002,914 + -1.1
1,002,914 + +0.5
1,002,914 + +0.3
1,002,914 + -0.2
1,002,914 + +0.5
1,002,914 + +0.0
1,002,914 + +0.4
1,002,914 + -0.0
1,002,914 + +0.4
1,002,914 + +0.4
1,002,914 + +0.2
1,002,914 + +0.8
1,002,914 + +0.1
1,002,914 + +0.1
1,002,914 + +0.3
1,002,915 - +0.1
1,002,915 - +0.1
1,002,915 - +0.5
1,002,915 - -0.3
1,002,915 - -0.5
1,002,915 - -0.9
1,002,915 - -0.6
1,003,046 - OLJFJH_05050 0.21 -0.3
1,003,249 + OLJFJH_05050 0.45 +0.0
1,003,250 - OLJFJH_05050 0.45 +0.0
1,003,461 + OLJFJH_05050 0.70 -0.0
1,003,473 - OLJFJH_05050 0.71 -0.7
1,003,473 - OLJFJH_05050 0.71 -0.0
1,003,494 + OLJFJH_05050 0.74 -0.3
1,003,580 + OLJFJH_05050 0.84 -1.0
1,003,580 + OLJFJH_05050 0.84 -0.1
1,003,580 + OLJFJH_05050 0.84 +0.0
1,003,581 - OLJFJH_05050 0.84 +0.2
1,003,772 - -0.3
1,003,841 + -0.4
1,003,841 + +0.7
1,003,858 + +0.4
1,003,859 - +0.3

Or see this region's nucleotide sequence