Strain Fitness in Erwinia amylovora T8 around OLJFJH_15520

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15510 and OLJFJH_15515 overlap by 8 nucleotidesOLJFJH_15515 and OLJFJH_15520 are separated by 175 nucleotidesOLJFJH_15520 and OLJFJH_15525 are separated by 88 nucleotidesOLJFJH_15525 and OLJFJH_15530 are separated by 153 nucleotides OLJFJH_15510: OLJFJH_15510 - cell division protein YceG, at 3,271,409 to 3,272,434 _15510 OLJFJH_15515: OLJFJH_15515 - aminodeoxychorismate lyase, at 3,272,427 to 3,273,245 _15515 OLJFJH_15520: OLJFJH_15520 - beta-ketoacyl-ACP synthase II, at 3,273,421 to 3,274,662 _15520 OLJFJH_15525: OLJFJH_15525 - cell division protein YceG, at 3,274,751 to 3,274,987 _15525 OLJFJH_15530: OLJFJH_15530 - 3-oxoacyl-ACP reductase FabG, at 3,275,141 to 3,275,875 _15530 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -3 -2 -1 0 1at 3272.429 kb on - strandat 3272.492 kb on - strandat 3272.590 kb on - strand, within OLJFJH_15515at 3272.671 kb on - strand, within OLJFJH_15515at 3272.681 kb on + strand, within OLJFJH_15515at 3272.819 kb on + strand, within OLJFJH_15515at 3272.909 kb on - strand, within OLJFJH_15515at 3272.939 kb on + strand, within OLJFJH_15515at 3272.940 kb on - strand, within OLJFJH_15515at 3273.109 kb on - strand, within OLJFJH_15515at 3273.212 kb on + strandat 3273.212 kb on + strandat 3273.212 kb on + strandat 3273.322 kb on + strandat 3273.357 kb on + strandat 3273.358 kb on - strandat 3273.358 kb on - strandat 3273.375 kb on - strandat 3273.401 kb on + strandat 3273.402 kb on - strandat 3273.404 kb on - strandat 3273.404 kb on - strandat 3273.417 kb on + strandat 3273.418 kb on - strandat 3273.481 kb on + strandat 3273.742 kb on - strand, within OLJFJH_15520at 3273.748 kb on - strand, within OLJFJH_15520at 3273.748 kb on - strand, within OLJFJH_15520at 3273.763 kb on - strand, within OLJFJH_15520at 3273.856 kb on - strand, within OLJFJH_15520at 3273.856 kb on - strand, within OLJFJH_15520at 3273.861 kb on - strand, within OLJFJH_15520at 3273.861 kb on - strand, within OLJFJH_15520at 3273.933 kb on - strand, within OLJFJH_15520at 3273.970 kb on + strand, within OLJFJH_15520at 3274.153 kb on - strand, within OLJFJH_15520at 3274.153 kb on - strand, within OLJFJH_15520at 3274.185 kb on + strand, within OLJFJH_15520at 3274.240 kb on - strand, within OLJFJH_15520at 3274.240 kb on - strand, within OLJFJH_15520at 3274.492 kb on - strand, within OLJFJH_15520at 3274.505 kb on - strand, within OLJFJH_15520at 3274.533 kb on + strand, within OLJFJH_15520at 3274.533 kb on + strand, within OLJFJH_15520at 3274.533 kb on + strand, within OLJFJH_15520at 3274.534 kb on - strand, within OLJFJH_15520at 3274.645 kb on + strandat 3274.646 kb on - strandat 3274.646 kb on - strandat 3275.151 kb on + strandat 3275.151 kb on + strandat 3275.152 kb on - strandat 3275.152 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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3,272,429 - -0.7
3,272,492 - -0.9
3,272,590 - OLJFJH_15515 0.20 +0.6
3,272,671 - OLJFJH_15515 0.30 -0.0
3,272,681 + OLJFJH_15515 0.31 +1.0
3,272,819 + OLJFJH_15515 0.48 -0.3
3,272,909 - OLJFJH_15515 0.59 +0.9
3,272,939 + OLJFJH_15515 0.63 +0.4
3,272,940 - OLJFJH_15515 0.63 -0.1
3,273,109 - OLJFJH_15515 0.83 +0.0
3,273,212 + -0.3
3,273,212 + +0.6
3,273,212 + -0.4
3,273,322 + -1.3
3,273,357 + +0.1
3,273,358 - -0.1
3,273,358 - -0.5
3,273,375 - -0.3
3,273,401 + +1.0
3,273,402 - +0.3
3,273,404 - -0.3
3,273,404 - +0.2
3,273,417 + -0.1
3,273,418 - -0.6
3,273,481 + -1.1
3,273,742 - OLJFJH_15520 0.26 -1.1
3,273,748 - OLJFJH_15520 0.26 -1.4
3,273,748 - OLJFJH_15520 0.26 -0.8
3,273,763 - OLJFJH_15520 0.28 +0.6
3,273,856 - OLJFJH_15520 0.35 +1.4
3,273,856 - OLJFJH_15520 0.35 -3.5
3,273,861 - OLJFJH_15520 0.35 -0.9
3,273,861 - OLJFJH_15520 0.35 -0.4
3,273,933 - OLJFJH_15520 0.41 -0.4
3,273,970 + OLJFJH_15520 0.44 -0.1
3,274,153 - OLJFJH_15520 0.59 -0.0
3,274,153 - OLJFJH_15520 0.59 -2.4
3,274,185 + OLJFJH_15520 0.62 -0.4
3,274,240 - OLJFJH_15520 0.66 +1.2
3,274,240 - OLJFJH_15520 0.66 -1.9
3,274,492 - OLJFJH_15520 0.86 -2.1
3,274,505 - OLJFJH_15520 0.87 -0.8
3,274,533 + OLJFJH_15520 0.90 -0.1
3,274,533 + OLJFJH_15520 0.90 -1.6
3,274,533 + OLJFJH_15520 0.90 -0.1
3,274,534 - OLJFJH_15520 0.90 -0.7
3,274,645 + -0.1
3,274,646 - -2.3
3,274,646 - -1.8
3,275,151 + +0.1
3,275,151 + -0.6
3,275,152 - +0.6
3,275,152 - +0.1

Or see this region's nucleotide sequence