Strain Fitness in Erwinia amylovora T8 around OLJFJH_09370

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09365 and OLJFJH_09370 overlap by 7 nucleotidesOLJFJH_09370 and OLJFJH_09375 are separated by 149 nucleotides OLJFJH_09365: OLJFJH_09365 - 5'/3'-nucleotidase SurE, at 1,938,738 to 1,939,499 _09365 OLJFJH_09370: OLJFJH_09370 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 1,939,493 to 1,940,119 _09370 OLJFJH_09375: OLJFJH_09375 - murein hydrolase activator NlpD, at 1,940,269 to 1,941,402 _09375 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 1938.535 kb on - strandat 1938.561 kb on + strandat 1938.564 kb on + strandat 1938.564 kb on + strandat 1938.564 kb on + strandat 1938.564 kb on + strandat 1938.564 kb on + strandat 1938.568 kb on + strandat 1938.575 kb on + strandat 1938.576 kb on - strandat 1938.576 kb on - strandat 1938.576 kb on - strandat 1938.576 kb on - strandat 1938.576 kb on - strandat 1938.579 kb on + strandat 1938.579 kb on + strandat 1938.579 kb on + strandat 1938.580 kb on - strandat 1938.580 kb on - strandat 1938.581 kb on + strandat 1938.585 kb on + strandat 1938.585 kb on + strandat 1938.585 kb on + strandat 1938.585 kb on + strandat 1938.586 kb on - strandat 1938.586 kb on - strandat 1938.723 kb on + strandat 1938.756 kb on - strandat 1938.918 kb on - strand, within OLJFJH_09365at 1938.955 kb on - strand, within OLJFJH_09365at 1938.968 kb on + strand, within OLJFJH_09365at 1939.044 kb on + strand, within OLJFJH_09365at 1939.128 kb on + strand, within OLJFJH_09365at 1939.128 kb on + strand, within OLJFJH_09365at 1939.129 kb on - strand, within OLJFJH_09365at 1939.175 kb on - strand, within OLJFJH_09365at 1939.186 kb on + strand, within OLJFJH_09365at 1939.209 kb on - strand, within OLJFJH_09365at 1939.212 kb on - strand, within OLJFJH_09365at 1939.212 kb on - strand, within OLJFJH_09365at 1939.212 kb on - strand, within OLJFJH_09365at 1939.212 kb on - strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.319 kb on + strand, within OLJFJH_09365at 1939.327 kb on - strand, within OLJFJH_09365at 1939.398 kb on + strand, within OLJFJH_09365at 1939.399 kb on - strand, within OLJFJH_09365at 1939.430 kb on + strandat 1939.509 kb on + strandat 1939.676 kb on + strand, within OLJFJH_09370at 1939.676 kb on + strand, within OLJFJH_09370at 1939.677 kb on - strand, within OLJFJH_09370at 1939.677 kb on - strand, within OLJFJH_09370at 1939.677 kb on - strand, within OLJFJH_09370at 1939.861 kb on + strand, within OLJFJH_09370at 1939.861 kb on + strand, within OLJFJH_09370at 1939.861 kb on + strand, within OLJFJH_09370at 1939.929 kb on + strand, within OLJFJH_09370at 1939.930 kb on - strand, within OLJFJH_09370at 1939.954 kb on - strand, within OLJFJH_09370at 1940.035 kb on + strand, within OLJFJH_09370at 1940.059 kb on + strandat 1940.141 kb on + strandat 1940.179 kb on + strandat 1940.179 kb on + strandat 1940.180 kb on - strandat 1940.182 kb on + strandat 1940.217 kb on - strandat 1940.229 kb on + strandat 1940.229 kb on + strandat 1940.229 kb on + strandat 1940.230 kb on - strandat 1940.230 kb on - strandat 1940.233 kb on + strandat 1940.234 kb on - strandat 1940.235 kb on + strandat 1940.298 kb on + strandat 1940.356 kb on - strandat 1940.367 kb on + strandat 1940.562 kb on + strand, within OLJFJH_09375at 1940.563 kb on - strand, within OLJFJH_09375at 1940.590 kb on + strand, within OLJFJH_09375at 1940.590 kb on + strand, within OLJFJH_09375at 1940.599 kb on - strand, within OLJFJH_09375at 1940.599 kb on - strand, within OLJFJH_09375at 1940.599 kb on - strand, within OLJFJH_09375at 1940.622 kb on + strand, within OLJFJH_09375at 1940.627 kb on - strand, within OLJFJH_09375at 1940.641 kb on + strand, within OLJFJH_09375at 1940.642 kb on - strand, within OLJFJH_09375at 1940.642 kb on - strand, within OLJFJH_09375at 1940.643 kb on + strand, within OLJFJH_09375at 1940.644 kb on - strand, within OLJFJH_09375at 1940.672 kb on - strand, within OLJFJH_09375at 1940.672 kb on - strand, within OLJFJH_09375at 1940.672 kb on - strand, within OLJFJH_09375at 1940.718 kb on + strand, within OLJFJH_09375at 1940.718 kb on + strand, within OLJFJH_09375at 1940.718 kb on + strand, within OLJFJH_09375at 1940.719 kb on - strand, within OLJFJH_09375at 1940.719 kb on - strand, within OLJFJH_09375at 1940.719 kb on - strand, within OLJFJH_09375at 1940.721 kb on + strand, within OLJFJH_09375at 1940.722 kb on - strand, within OLJFJH_09375at 1940.897 kb on + strand, within OLJFJH_09375at 1940.901 kb on + strand, within OLJFJH_09375at 1940.902 kb on - strand, within OLJFJH_09375at 1940.906 kb on - strand, within OLJFJH_09375at 1940.923 kb on - strand, within OLJFJH_09375at 1941.010 kb on - strand, within OLJFJH_09375

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,938,535 - +0.3
1,938,561 + -0.4
1,938,564 + +1.5
1,938,564 + -0.2
1,938,564 + +0.3
1,938,564 + -0.6
1,938,564 + -0.5
1,938,568 + +0.1
1,938,575 + +0.7
1,938,576 - -3.0
1,938,576 - -0.0
1,938,576 - -2.4
1,938,576 - +0.9
1,938,576 - +0.1
1,938,579 + +0.7
1,938,579 + +0.4
1,938,579 + +0.4
1,938,580 - -0.7
1,938,580 - -0.3
1,938,581 + +0.4
1,938,585 + -0.4
1,938,585 + +0.1
1,938,585 + +0.1
1,938,585 + +0.3
1,938,586 - -0.5
1,938,586 - -0.1
1,938,723 + -0.3
1,938,756 - -1.6
1,938,918 - OLJFJH_09365 0.24 -0.8
1,938,955 - OLJFJH_09365 0.28 -2.0
1,938,968 + OLJFJH_09365 0.30 -1.1
1,939,044 + OLJFJH_09365 0.40 -0.7
1,939,128 + OLJFJH_09365 0.51 -0.2
1,939,128 + OLJFJH_09365 0.51 -1.2
1,939,129 - OLJFJH_09365 0.51 -1.5
1,939,175 - OLJFJH_09365 0.57 -1.8
1,939,186 + OLJFJH_09365 0.59 -2.7
1,939,209 - OLJFJH_09365 0.62 -0.9
1,939,212 - OLJFJH_09365 0.62 -1.4
1,939,212 - OLJFJH_09365 0.62 -1.0
1,939,212 - OLJFJH_09365 0.62 -2.8
1,939,212 - OLJFJH_09365 0.62 -2.5
1,939,319 + OLJFJH_09365 0.76 +0.6
1,939,319 + OLJFJH_09365 0.76 -0.6
1,939,319 + OLJFJH_09365 0.76 -1.6
1,939,319 + OLJFJH_09365 0.76 -1.1
1,939,319 + OLJFJH_09365 0.76 -1.0
1,939,327 - OLJFJH_09365 0.77 -1.3
1,939,398 + OLJFJH_09365 0.87 +0.4
1,939,399 - OLJFJH_09365 0.87 -2.3
1,939,430 + -2.1
1,939,509 + -1.6
1,939,676 + OLJFJH_09370 0.29 -1.6
1,939,676 + OLJFJH_09370 0.29 -2.6
1,939,677 - OLJFJH_09370 0.29 -1.1
1,939,677 - OLJFJH_09370 0.29 -1.2
1,939,677 - OLJFJH_09370 0.29 -1.5
1,939,861 + OLJFJH_09370 0.59 -1.9
1,939,861 + OLJFJH_09370 0.59 -1.7
1,939,861 + OLJFJH_09370 0.59 -2.4
1,939,929 + OLJFJH_09370 0.70 -1.0
1,939,930 - OLJFJH_09370 0.70 -0.3
1,939,954 - OLJFJH_09370 0.74 -0.8
1,940,035 + OLJFJH_09370 0.86 -2.4
1,940,059 + -0.8
1,940,141 + -1.1
1,940,179 + -0.3
1,940,179 + -1.0
1,940,180 - +2.1
1,940,182 + -0.2
1,940,217 - +5.7
1,940,229 + -0.9
1,940,229 + +0.5
1,940,229 + +0.6
1,940,230 - +8.1
1,940,230 - +8.5
1,940,233 + +0.4
1,940,234 - +8.5
1,940,235 + +0.5
1,940,298 + +9.3
1,940,356 - +6.6
1,940,367 + +8.2
1,940,562 + OLJFJH_09375 0.26 +8.6
1,940,563 - OLJFJH_09375 0.26 +8.1
1,940,590 + OLJFJH_09375 0.28 +8.6
1,940,590 + OLJFJH_09375 0.28 +8.3
1,940,599 - OLJFJH_09375 0.29 +8.1
1,940,599 - OLJFJH_09375 0.29 +8.1
1,940,599 - OLJFJH_09375 0.29 +7.2
1,940,622 + OLJFJH_09375 0.31 +7.9
1,940,627 - OLJFJH_09375 0.32 +8.6
1,940,641 + OLJFJH_09375 0.33 +8.8
1,940,642 - OLJFJH_09375 0.33 +7.7
1,940,642 - OLJFJH_09375 0.33 +8.0
1,940,643 + OLJFJH_09375 0.33 +8.2
1,940,644 - OLJFJH_09375 0.33 +6.6
1,940,672 - OLJFJH_09375 0.36 +8.0
1,940,672 - OLJFJH_09375 0.36 +8.2
1,940,672 - OLJFJH_09375 0.36 +8.5
1,940,718 + OLJFJH_09375 0.40 +7.3
1,940,718 + OLJFJH_09375 0.40 +8.5
1,940,718 + OLJFJH_09375 0.40 +9.2
1,940,719 - OLJFJH_09375 0.40 +8.5
1,940,719 - OLJFJH_09375 0.40 +8.9
1,940,719 - OLJFJH_09375 0.40 +8.3
1,940,721 + OLJFJH_09375 0.40 +6.9
1,940,722 - OLJFJH_09375 0.40 +8.6
1,940,897 + OLJFJH_09375 0.55 +8.0
1,940,901 + OLJFJH_09375 0.56 +8.0
1,940,902 - OLJFJH_09375 0.56 +7.0
1,940,906 - OLJFJH_09375 0.56 +7.1
1,940,923 - OLJFJH_09375 0.58 +3.6
1,941,010 - OLJFJH_09375 0.65 +7.1

Or see this region's nucleotide sequence