Strain Fitness in Erwinia amylovora T8 around OLJFJH_08650

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_08645 and OLJFJH_08650 are separated by 263 nucleotidesOLJFJH_08650 and OLJFJH_08655 are separated by 21 nucleotides OLJFJH_08645: OLJFJH_08645 - transketolase, at 1,772,434 to 1,774,425 _08645 OLJFJH_08650: OLJFJH_08650 - erythrose-4-phosphate dehydrogenase, at 1,774,689 to 1,775,735 _08650 OLJFJH_08655: OLJFJH_08655 - phosphoglycerate kinase, at 1,775,757 to 1,776,920 _08655 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1773.722 kb on - strand, within OLJFJH_08645at 1773.752 kb on - strand, within OLJFJH_08645at 1773.808 kb on + strand, within OLJFJH_08645at 1773.808 kb on + strand, within OLJFJH_08645at 1773.808 kb on + strand, within OLJFJH_08645at 1773.808 kb on + strand, within OLJFJH_08645at 1773.808 kb on + strand, within OLJFJH_08645at 1773.809 kb on - strand, within OLJFJH_08645at 1773.809 kb on - strand, within OLJFJH_08645at 1773.809 kb on - strand, within OLJFJH_08645at 1773.809 kb on - strand, within OLJFJH_08645at 1773.830 kb on + strand, within OLJFJH_08645at 1773.901 kb on - strand, within OLJFJH_08645at 1773.946 kb on + strand, within OLJFJH_08645at 1773.946 kb on + strand, within OLJFJH_08645at 1773.947 kb on - strand, within OLJFJH_08645at 1773.947 kb on - strand, within OLJFJH_08645at 1774.054 kb on + strand, within OLJFJH_08645at 1774.054 kb on + strand, within OLJFJH_08645at 1774.055 kb on - strand, within OLJFJH_08645at 1774.055 kb on - strand, within OLJFJH_08645at 1774.055 kb on - strand, within OLJFJH_08645at 1774.162 kb on - strand, within OLJFJH_08645at 1774.179 kb on + strand, within OLJFJH_08645at 1774.180 kb on - strand, within OLJFJH_08645at 1774.285 kb on + strandat 1774.286 kb on - strandat 1774.297 kb on + strandat 1774.542 kb on + strandat 1774.543 kb on - strandat 1774.548 kb on + strandat 1774.548 kb on + strandat 1774.552 kb on - strandat 1774.605 kb on + strandat 1774.614 kb on - strandat 1774.752 kb on + strandat 1774.753 kb on - strandat 1774.753 kb on - strandat 1774.836 kb on + strand, within OLJFJH_08650at 1774.837 kb on - strand, within OLJFJH_08650at 1774.837 kb on - strand, within OLJFJH_08650at 1774.925 kb on + strand, within OLJFJH_08650at 1775.094 kb on + strand, within OLJFJH_08650at 1775.095 kb on - strand, within OLJFJH_08650at 1775.217 kb on - strand, within OLJFJH_08650at 1775.268 kb on + strand, within OLJFJH_08650at 1775.354 kb on - strand, within OLJFJH_08650at 1775.440 kb on + strand, within OLJFJH_08650at 1775.441 kb on - strand, within OLJFJH_08650at 1775.504 kb on + strand, within OLJFJH_08650at 1775.505 kb on - strand, within OLJFJH_08650at 1775.505 kb on - strand, within OLJFJH_08650at 1775.505 kb on - strand, within OLJFJH_08650at 1775.510 kb on + strand, within OLJFJH_08650at 1775.511 kb on - strand, within OLJFJH_08650at 1775.512 kb on + strand, within OLJFJH_08650at 1775.512 kb on + strand, within OLJFJH_08650at 1775.512 kb on + strand, within OLJFJH_08650at 1775.513 kb on - strand, within OLJFJH_08650at 1775.578 kb on + strand, within OLJFJH_08650at 1775.578 kb on + strand, within OLJFJH_08650at 1775.579 kb on - strand, within OLJFJH_08650at 1775.618 kb on + strand, within OLJFJH_08650at 1775.680 kb on + strandat 1775.725 kb on + strandat 1775.768 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
remove
1,773,722 - OLJFJH_08645 0.65 -0.3
1,773,752 - OLJFJH_08645 0.66 +1.0
1,773,808 + OLJFJH_08645 0.69 -1.1
1,773,808 + OLJFJH_08645 0.69 +0.5
1,773,808 + OLJFJH_08645 0.69 -1.3
1,773,808 + OLJFJH_08645 0.69 -1.2
1,773,808 + OLJFJH_08645 0.69 -1.2
1,773,809 - OLJFJH_08645 0.69 +0.3
1,773,809 - OLJFJH_08645 0.69 -1.3
1,773,809 - OLJFJH_08645 0.69 -0.2
1,773,809 - OLJFJH_08645 0.69 +0.2
1,773,830 + OLJFJH_08645 0.70 -1.4
1,773,901 - OLJFJH_08645 0.74 -1.4
1,773,946 + OLJFJH_08645 0.76 -1.0
1,773,946 + OLJFJH_08645 0.76 -0.9
1,773,947 - OLJFJH_08645 0.76 -0.0
1,773,947 - OLJFJH_08645 0.76 -0.3
1,774,054 + OLJFJH_08645 0.81 -0.8
1,774,054 + OLJFJH_08645 0.81 -0.4
1,774,055 - OLJFJH_08645 0.81 -0.7
1,774,055 - OLJFJH_08645 0.81 +0.1
1,774,055 - OLJFJH_08645 0.81 -3.3
1,774,162 - OLJFJH_08645 0.87 -0.8
1,774,179 + OLJFJH_08645 0.88 -0.5
1,774,180 - OLJFJH_08645 0.88 -0.3
1,774,285 + -0.8
1,774,286 - -0.6
1,774,297 + -0.1
1,774,542 + +0.2
1,774,543 - -0.1
1,774,548 + +0.1
1,774,548 + +1.2
1,774,552 - +1.6
1,774,605 + +0.5
1,774,614 - -1.7
1,774,752 + -3.3
1,774,753 - -2.4
1,774,753 - -1.4
1,774,836 + OLJFJH_08650 0.14 -3.1
1,774,837 - OLJFJH_08650 0.14 -3.2
1,774,837 - OLJFJH_08650 0.14 -4.2
1,774,925 + OLJFJH_08650 0.23 -2.8
1,775,094 + OLJFJH_08650 0.39 -3.1
1,775,095 - OLJFJH_08650 0.39 -1.0
1,775,217 - OLJFJH_08650 0.50 -3.0
1,775,268 + OLJFJH_08650 0.55 -3.7
1,775,354 - OLJFJH_08650 0.64 -3.0
1,775,440 + OLJFJH_08650 0.72 -3.1
1,775,441 - OLJFJH_08650 0.72 -3.7
1,775,504 + OLJFJH_08650 0.78 -3.9
1,775,505 - OLJFJH_08650 0.78 -2.8
1,775,505 - OLJFJH_08650 0.78 -2.9
1,775,505 - OLJFJH_08650 0.78 -2.4
1,775,510 + OLJFJH_08650 0.78 -4.5
1,775,511 - OLJFJH_08650 0.79 -2.6
1,775,512 + OLJFJH_08650 0.79 -3.6
1,775,512 + OLJFJH_08650 0.79 +0.2
1,775,512 + OLJFJH_08650 0.79 -3.5
1,775,513 - OLJFJH_08650 0.79 -0.2
1,775,578 + OLJFJH_08650 0.85 -2.7
1,775,578 + OLJFJH_08650 0.85 -3.1
1,775,579 - OLJFJH_08650 0.85 -1.3
1,775,618 + OLJFJH_08650 0.89 -3.2
1,775,680 + -3.4
1,775,725 + +0.5
1,775,768 + +0.8

Or see this region's nucleotide sequence