Strain Fitness in Erwinia amylovora T8 around OLJFJH_08530

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08520 and OLJFJH_08525 are separated by 135 nucleotidesOLJFJH_08525 and OLJFJH_08530 are separated by 8 nucleotidesOLJFJH_08530 and OLJFJH_08535 are separated by 15 nucleotides OLJFJH_08520: OLJFJH_08520 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 1,748,023 to 1,748,616 _08520 OLJFJH_08525: OLJFJH_08525 - YGGT family, at 1,748,752 to 1,749,291 _08525 OLJFJH_08530: OLJFJH_08530 - YggS family pyridoxal phosphate enzyme, at 1,749,300 to 1,750,013 _08530 OLJFJH_08535: OLJFJH_08535 - type IV pili twitching motility protein PilT, at 1,750,029 to 1,751,162 _08535 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1748.367 kb on - strand, within OLJFJH_08520at 1748.389 kb on + strand, within OLJFJH_08520at 1748.389 kb on + strand, within OLJFJH_08520at 1748.389 kb on + strand, within OLJFJH_08520at 1748.389 kb on + strand, within OLJFJH_08520at 1748.389 kb on + strand, within OLJFJH_08520at 1748.390 kb on - strand, within OLJFJH_08520at 1748.390 kb on - strand, within OLJFJH_08520at 1748.390 kb on - strand, within OLJFJH_08520at 1748.390 kb on - strand, within OLJFJH_08520at 1748.391 kb on + strand, within OLJFJH_08520at 1748.391 kb on + strand, within OLJFJH_08520at 1748.391 kb on + strand, within OLJFJH_08520at 1748.392 kb on - strand, within OLJFJH_08520at 1748.392 kb on - strand, within OLJFJH_08520at 1748.392 kb on - strand, within OLJFJH_08520at 1748.392 kb on - strand, within OLJFJH_08520at 1748.395 kb on + strand, within OLJFJH_08520at 1748.602 kb on + strandat 1748.602 kb on + strandat 1748.603 kb on - strandat 1748.616 kb on + strandat 1748.685 kb on - strandat 1748.685 kb on - strandat 1748.753 kb on + strandat 1748.753 kb on + strandat 1748.753 kb on + strandat 1748.775 kb on + strandat 1748.776 kb on - strandat 1748.776 kb on - strandat 1748.776 kb on - strandat 1748.777 kb on + strandat 1748.802 kb on + strandat 1748.802 kb on + strandat 1748.803 kb on - strandat 1748.803 kb on - strandat 1748.803 kb on - strandat 1748.804 kb on + strandat 1748.804 kb on + strandat 1748.804 kb on + strandat 1748.804 kb on + strandat 1748.804 kb on + strandat 1748.805 kb on - strandat 1748.805 kb on - strandat 1748.805 kb on - strandat 1748.805 kb on - strandat 1748.899 kb on + strand, within OLJFJH_08525at 1748.909 kb on + strand, within OLJFJH_08525at 1748.909 kb on + strand, within OLJFJH_08525at 1748.909 kb on + strand, within OLJFJH_08525at 1748.909 kb on + strand, within OLJFJH_08525at 1748.909 kb on + strand, within OLJFJH_08525at 1748.910 kb on - strand, within OLJFJH_08525at 1748.910 kb on - strand, within OLJFJH_08525at 1748.975 kb on - strand, within OLJFJH_08525at 1748.975 kb on - strand, within OLJFJH_08525at 1748.981 kb on - strand, within OLJFJH_08525at 1749.082 kb on - strand, within OLJFJH_08525at 1749.106 kb on - strand, within OLJFJH_08525at 1749.132 kb on + strand, within OLJFJH_08525at 1749.193 kb on - strand, within OLJFJH_08525at 1749.194 kb on + strand, within OLJFJH_08525at 1749.194 kb on + strand, within OLJFJH_08525at 1749.194 kb on + strand, within OLJFJH_08525at 1749.194 kb on + strand, within OLJFJH_08525at 1749.194 kb on + strand, within OLJFJH_08525at 1749.194 kb on + strand, within OLJFJH_08525at 1749.246 kb on + strandat 1749.247 kb on - strandat 1749.247 kb on - strandat 1749.248 kb on + strandat 1749.248 kb on + strandat 1749.249 kb on - strandat 1749.249 kb on - strandat 1749.314 kb on + strandat 1749.314 kb on + strandat 1749.332 kb on - strandat 1749.363 kb on - strandat 1749.461 kb on + strand, within OLJFJH_08530at 1749.461 kb on + strand, within OLJFJH_08530at 1749.462 kb on - strand, within OLJFJH_08530at 1749.505 kb on + strand, within OLJFJH_08530at 1749.505 kb on + strand, within OLJFJH_08530at 1749.505 kb on + strand, within OLJFJH_08530at 1749.505 kb on + strand, within OLJFJH_08530at 1749.505 kb on + strand, within OLJFJH_08530at 1749.506 kb on - strand, within OLJFJH_08530at 1749.506 kb on - strand, within OLJFJH_08530at 1749.506 kb on - strand, within OLJFJH_08530at 1749.506 kb on - strand, within OLJFJH_08530at 1749.506 kb on - strand, within OLJFJH_08530at 1749.506 kb on - strand, within OLJFJH_08530at 1749.506 kb on - strand, within OLJFJH_08530at 1749.567 kb on + strand, within OLJFJH_08530at 1749.602 kb on + strand, within OLJFJH_08530at 1749.632 kb on + strand, within OLJFJH_08530at 1749.632 kb on + strand, within OLJFJH_08530at 1749.633 kb on - strand, within OLJFJH_08530at 1749.633 kb on - strand, within OLJFJH_08530at 1749.633 kb on - strand, within OLJFJH_08530at 1749.633 kb on - strand, within OLJFJH_08530at 1749.758 kb on + strand, within OLJFJH_08530at 1749.758 kb on + strand, within OLJFJH_08530at 1749.758 kb on + strand, within OLJFJH_08530at 1749.758 kb on + strand, within OLJFJH_08530at 1749.761 kb on + strand, within OLJFJH_08530at 1749.761 kb on + strand, within OLJFJH_08530at 1749.761 kb on + strand, within OLJFJH_08530at 1749.762 kb on - strand, within OLJFJH_08530at 1749.822 kb on - strand, within OLJFJH_08530at 1749.842 kb on - strand, within OLJFJH_08530at 1749.926 kb on + strand, within OLJFJH_08530at 1749.927 kb on - strand, within OLJFJH_08530at 1749.953 kb on + strandat 1749.953 kb on + strandat 1749.954 kb on - strandat 1749.954 kb on - strandat 1749.954 kb on - strandat 1749.954 kb on - strandat 1749.991 kb on - strandat 1749.991 kb on - strandat 1750.014 kb on - strandat 1750.045 kb on + strandat 1750.046 kb on - strandat 1750.164 kb on - strand, within OLJFJH_08535at 1750.196 kb on + strand, within OLJFJH_08535at 1750.197 kb on - strand, within OLJFJH_08535at 1750.363 kb on + strand, within OLJFJH_08535at 1750.405 kb on + strand, within OLJFJH_08535at 1750.493 kb on + strand, within OLJFJH_08535at 1750.904 kb on - strand, within OLJFJH_08535at 1750.904 kb on - strand, within OLJFJH_08535

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,748,367 - OLJFJH_08520 0.58 +0.5
1,748,389 + OLJFJH_08520 0.62 +0.0
1,748,389 + OLJFJH_08520 0.62 -0.9
1,748,389 + OLJFJH_08520 0.62 -0.6
1,748,389 + OLJFJH_08520 0.62 +0.2
1,748,389 + OLJFJH_08520 0.62 +0.6
1,748,390 - OLJFJH_08520 0.62 +1.0
1,748,390 - OLJFJH_08520 0.62 +0.5
1,748,390 - OLJFJH_08520 0.62 +0.5
1,748,390 - OLJFJH_08520 0.62 -0.3
1,748,391 + OLJFJH_08520 0.62 +0.5
1,748,391 + OLJFJH_08520 0.62 +0.1
1,748,391 + OLJFJH_08520 0.62 -0.4
1,748,392 - OLJFJH_08520 0.62 -0.0
1,748,392 - OLJFJH_08520 0.62 -1.0
1,748,392 - OLJFJH_08520 0.62 -0.1
1,748,392 - OLJFJH_08520 0.62 +0.8
1,748,395 + OLJFJH_08520 0.63 +0.7
1,748,602 + -0.3
1,748,602 + -0.2
1,748,603 - +0.5
1,748,616 + -0.3
1,748,685 - +0.2
1,748,685 - -0.1
1,748,753 + -0.1
1,748,753 + +0.1
1,748,753 + -1.2
1,748,775 + -0.5
1,748,776 - +0.6
1,748,776 - -0.3
1,748,776 - +0.2
1,748,777 + +1.2
1,748,802 + +0.2
1,748,802 + +0.5
1,748,803 - +0.3
1,748,803 - +0.3
1,748,803 - +1.2
1,748,804 + +0.6
1,748,804 + +0.2
1,748,804 + -0.1
1,748,804 + +0.5
1,748,804 + +0.3
1,748,805 - +0.6
1,748,805 - -0.0
1,748,805 - -1.0
1,748,805 - +0.1
1,748,899 + OLJFJH_08525 0.27 -0.6
1,748,909 + OLJFJH_08525 0.29 +0.2
1,748,909 + OLJFJH_08525 0.29 +0.4
1,748,909 + OLJFJH_08525 0.29 +0.0
1,748,909 + OLJFJH_08525 0.29 -0.7
1,748,909 + OLJFJH_08525 0.29 -0.9
1,748,910 - OLJFJH_08525 0.29 -0.1
1,748,910 - OLJFJH_08525 0.29 -0.5
1,748,975 - OLJFJH_08525 0.41 -1.0
1,748,975 - OLJFJH_08525 0.41 -0.2
1,748,981 - OLJFJH_08525 0.42 -0.1
1,749,082 - OLJFJH_08525 0.61 +0.5
1,749,106 - OLJFJH_08525 0.66 -0.9
1,749,132 + OLJFJH_08525 0.70 +0.1
1,749,193 - OLJFJH_08525 0.82 +1.0
1,749,194 + OLJFJH_08525 0.82 -0.6
1,749,194 + OLJFJH_08525 0.82 +0.8
1,749,194 + OLJFJH_08525 0.82 -0.9
1,749,194 + OLJFJH_08525 0.82 -0.7
1,749,194 + OLJFJH_08525 0.82 +0.2
1,749,194 + OLJFJH_08525 0.82 -1.9
1,749,246 + -0.8
1,749,247 - -0.2
1,749,247 - -0.1
1,749,248 + -0.3
1,749,248 + -1.1
1,749,249 - +0.3
1,749,249 - +0.2
1,749,314 + -1.8
1,749,314 + -0.1
1,749,332 - +0.9
1,749,363 - -1.1
1,749,461 + OLJFJH_08530 0.23 -1.6
1,749,461 + OLJFJH_08530 0.23 -2.0
1,749,462 - OLJFJH_08530 0.23 -2.2
1,749,505 + OLJFJH_08530 0.29 -2.1
1,749,505 + OLJFJH_08530 0.29 -0.8
1,749,505 + OLJFJH_08530 0.29 -1.3
1,749,505 + OLJFJH_08530 0.29 -1.0
1,749,505 + OLJFJH_08530 0.29 -1.6
1,749,506 - OLJFJH_08530 0.29 -2.1
1,749,506 - OLJFJH_08530 0.29 -1.1
1,749,506 - OLJFJH_08530 0.29 -1.3
1,749,506 - OLJFJH_08530 0.29 -2.4
1,749,506 - OLJFJH_08530 0.29 -1.4
1,749,506 - OLJFJH_08530 0.29 -1.3
1,749,506 - OLJFJH_08530 0.29 +1.2
1,749,567 + OLJFJH_08530 0.37 -2.0
1,749,602 + OLJFJH_08530 0.42 -1.8
1,749,632 + OLJFJH_08530 0.46 -2.1
1,749,632 + OLJFJH_08530 0.46 -1.7
1,749,633 - OLJFJH_08530 0.47 -2.5
1,749,633 - OLJFJH_08530 0.47 -2.0
1,749,633 - OLJFJH_08530 0.47 -2.1
1,749,633 - OLJFJH_08530 0.47 -1.2
1,749,758 + OLJFJH_08530 0.64 -2.3
1,749,758 + OLJFJH_08530 0.64 +0.0
1,749,758 + OLJFJH_08530 0.64 -2.0
1,749,758 + OLJFJH_08530 0.64 -1.0
1,749,761 + OLJFJH_08530 0.65 +0.0
1,749,761 + OLJFJH_08530 0.65 -1.3
1,749,761 + OLJFJH_08530 0.65 -1.9
1,749,762 - OLJFJH_08530 0.65 -1.5
1,749,822 - OLJFJH_08530 0.73 -0.3
1,749,842 - OLJFJH_08530 0.76 -1.4
1,749,926 + OLJFJH_08530 0.88 -1.1
1,749,927 - OLJFJH_08530 0.88 -1.1
1,749,953 + -1.8
1,749,953 + -1.5
1,749,954 - -1.0
1,749,954 - -1.0
1,749,954 - -1.6
1,749,954 - -1.9
1,749,991 - -1.5
1,749,991 - -1.0
1,750,014 - +0.5
1,750,045 + -0.4
1,750,046 - +0.2
1,750,164 - OLJFJH_08535 0.12 -0.5
1,750,196 + OLJFJH_08535 0.15 -0.2
1,750,197 - OLJFJH_08535 0.15 -0.3
1,750,363 + OLJFJH_08535 0.29 -0.7
1,750,405 + OLJFJH_08535 0.33 -1.8
1,750,493 + OLJFJH_08535 0.41 -0.2
1,750,904 - OLJFJH_08535 0.77 +1.9
1,750,904 - OLJFJH_08535 0.77 +0.7

Or see this region's nucleotide sequence