Strain Fitness in Erwinia amylovora T8 around OLJFJH_07465

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07460 and OLJFJH_07465 overlap by 11 nucleotidesOLJFJH_07465 and OLJFJH_07470 overlap by 4 nucleotides OLJFJH_07460: OLJFJH_07460 - DNA sulfur modification protein DndD, at 1,526,709 to 1,528,709 _07460 OLJFJH_07465: OLJFJH_07465 - DNA phosphorothioation system sulfurtransferase DndC, at 1,528,699 to 1,530,333 _07465 OLJFJH_07470: OLJFJH_07470 - DNA sulfur modification protein DndB, at 1,530,330 to 1,531,415 _07470 Position (kb) 1528 1529 1530 1531Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1527.775 kb on - strand, within OLJFJH_07460at 1527.792 kb on - strand, within OLJFJH_07460at 1527.838 kb on - strand, within OLJFJH_07460at 1528.136 kb on + strand, within OLJFJH_07460at 1528.136 kb on + strand, within OLJFJH_07460at 1528.137 kb on - strand, within OLJFJH_07460at 1528.155 kb on + strand, within OLJFJH_07460at 1528.392 kb on - strand, within OLJFJH_07460at 1528.409 kb on + strand, within OLJFJH_07460at 1528.491 kb on - strand, within OLJFJH_07460at 1528.493 kb on - strand, within OLJFJH_07460at 1528.534 kb on + strandat 1528.584 kb on + strandat 1528.913 kb on - strand, within OLJFJH_07465at 1528.931 kb on - strand, within OLJFJH_07465at 1528.981 kb on + strand, within OLJFJH_07465at 1529.079 kb on - strand, within OLJFJH_07465at 1529.091 kb on - strand, within OLJFJH_07465at 1529.094 kb on + strand, within OLJFJH_07465at 1529.094 kb on + strand, within OLJFJH_07465at 1529.095 kb on - strand, within OLJFJH_07465at 1529.185 kb on - strand, within OLJFJH_07465at 1529.283 kb on + strand, within OLJFJH_07465at 1529.284 kb on - strand, within OLJFJH_07465at 1529.318 kb on + strand, within OLJFJH_07465at 1529.318 kb on + strand, within OLJFJH_07465at 1529.319 kb on - strand, within OLJFJH_07465at 1529.325 kb on - strand, within OLJFJH_07465at 1529.388 kb on + strand, within OLJFJH_07465at 1529.527 kb on - strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.632 kb on - strand, within OLJFJH_07465at 1529.666 kb on - strand, within OLJFJH_07465at 1529.708 kb on + strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.712 kb on + strand, within OLJFJH_07465at 1529.712 kb on + strand, within OLJFJH_07465at 1529.734 kb on - strand, within OLJFJH_07465at 1529.776 kb on + strand, within OLJFJH_07465at 1529.777 kb on - strand, within OLJFJH_07465at 1529.851 kb on - strand, within OLJFJH_07465at 1530.081 kb on + strand, within OLJFJH_07465at 1530.092 kb on - strand, within OLJFJH_07465at 1530.147 kb on - strand, within OLJFJH_07465at 1530.147 kb on - strand, within OLJFJH_07465at 1530.148 kb on + strand, within OLJFJH_07465at 1530.148 kb on + strand, within OLJFJH_07465at 1530.148 kb on + strand, within OLJFJH_07465at 1530.156 kb on + strand, within OLJFJH_07465at 1530.157 kb on - strand, within OLJFJH_07465at 1530.221 kb on + strandat 1530.489 kb on - strand, within OLJFJH_07470at 1530.542 kb on - strand, within OLJFJH_07470at 1530.553 kb on - strand, within OLJFJH_07470at 1530.607 kb on + strand, within OLJFJH_07470at 1530.608 kb on - strand, within OLJFJH_07470at 1530.608 kb on - strand, within OLJFJH_07470at 1530.644 kb on + strand, within OLJFJH_07470at 1530.691 kb on + strand, within OLJFJH_07470at 1530.750 kb on + strand, within OLJFJH_07470at 1530.751 kb on - strand, within OLJFJH_07470at 1530.786 kb on - strand, within OLJFJH_07470at 1530.795 kb on - strand, within OLJFJH_07470at 1530.812 kb on + strand, within OLJFJH_07470at 1530.813 kb on - strand, within OLJFJH_07470at 1530.841 kb on - strand, within OLJFJH_07470at 1530.905 kb on - strand, within OLJFJH_07470at 1531.000 kb on - strand, within OLJFJH_07470at 1531.042 kb on - strand, within OLJFJH_07470at 1531.042 kb on - strand, within OLJFJH_07470at 1531.113 kb on + strand, within OLJFJH_07470at 1531.114 kb on - strand, within OLJFJH_07470at 1531.195 kb on + strand, within OLJFJH_07470at 1531.196 kb on - strand, within OLJFJH_07470at 1531.196 kb on - strand, within OLJFJH_07470at 1531.256 kb on + strand, within OLJFJH_07470at 1531.256 kb on + strand, within OLJFJH_07470

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,527,775 - OLJFJH_07460 0.53 -2.3
1,527,792 - OLJFJH_07460 0.54 +0.6
1,527,838 - OLJFJH_07460 0.56 -1.9
1,528,136 + OLJFJH_07460 0.71 -2.4
1,528,136 + OLJFJH_07460 0.71 -2.7
1,528,137 - OLJFJH_07460 0.71 -1.6
1,528,155 + OLJFJH_07460 0.72 -0.4
1,528,392 - OLJFJH_07460 0.84 -1.2
1,528,409 + OLJFJH_07460 0.85 -3.3
1,528,491 - OLJFJH_07460 0.89 -2.4
1,528,493 - OLJFJH_07460 0.89 -2.3
1,528,534 + -1.2
1,528,584 + -3.3
1,528,913 - OLJFJH_07465 0.13 -2.7
1,528,931 - OLJFJH_07465 0.14 -1.0
1,528,981 + OLJFJH_07465 0.17 -3.7
1,529,079 - OLJFJH_07465 0.23 -1.8
1,529,091 - OLJFJH_07465 0.24 -4.1
1,529,094 + OLJFJH_07465 0.24 -2.6
1,529,094 + OLJFJH_07465 0.24 -2.3
1,529,095 - OLJFJH_07465 0.24 -1.5
1,529,185 - OLJFJH_07465 0.30 -1.3
1,529,283 + OLJFJH_07465 0.36 -3.7
1,529,284 - OLJFJH_07465 0.36 -1.6
1,529,318 + OLJFJH_07465 0.38 -0.8
1,529,318 + OLJFJH_07465 0.38 -2.9
1,529,319 - OLJFJH_07465 0.38 -2.6
1,529,325 - OLJFJH_07465 0.38 -2.5
1,529,388 + OLJFJH_07465 0.42 -3.5
1,529,527 - OLJFJH_07465 0.51 -2.8
1,529,576 + OLJFJH_07465 0.54 -5.2
1,529,576 + OLJFJH_07465 0.54 -1.4
1,529,576 + OLJFJH_07465 0.54 -3.0
1,529,576 + OLJFJH_07465 0.54 -2.5
1,529,577 - OLJFJH_07465 0.54 -2.6
1,529,577 - OLJFJH_07465 0.54 -1.9
1,529,577 - OLJFJH_07465 0.54 -1.0
1,529,577 - OLJFJH_07465 0.54 -2.7
1,529,577 - OLJFJH_07465 0.54 -3.1
1,529,632 - OLJFJH_07465 0.57 -2.7
1,529,666 - OLJFJH_07465 0.59 -1.3
1,529,708 + OLJFJH_07465 0.62 -2.9
1,529,709 - OLJFJH_07465 0.62 -4.1
1,529,709 - OLJFJH_07465 0.62 -1.9
1,529,709 - OLJFJH_07465 0.62 -2.0
1,529,709 - OLJFJH_07465 0.62 -3.2
1,529,709 - OLJFJH_07465 0.62 -2.7
1,529,712 + OLJFJH_07465 0.62 -1.3
1,529,712 + OLJFJH_07465 0.62 -1.5
1,529,734 - OLJFJH_07465 0.63 -2.7
1,529,776 + OLJFJH_07465 0.66 -1.2
1,529,777 - OLJFJH_07465 0.66 -1.8
1,529,851 - OLJFJH_07465 0.70 -3.2
1,530,081 + OLJFJH_07465 0.85 -0.8
1,530,092 - OLJFJH_07465 0.85 -2.8
1,530,147 - OLJFJH_07465 0.89 -1.9
1,530,147 - OLJFJH_07465 0.89 -3.4
1,530,148 + OLJFJH_07465 0.89 -0.8
1,530,148 + OLJFJH_07465 0.89 -1.5
1,530,148 + OLJFJH_07465 0.89 +0.1
1,530,156 + OLJFJH_07465 0.89 -3.9
1,530,157 - OLJFJH_07465 0.89 -3.8
1,530,221 + -3.2
1,530,489 - OLJFJH_07470 0.15 -1.0
1,530,542 - OLJFJH_07470 0.20 -0.5
1,530,553 - OLJFJH_07470 0.21 -0.9
1,530,607 + OLJFJH_07470 0.26 -2.7
1,530,608 - OLJFJH_07470 0.26 -1.2
1,530,608 - OLJFJH_07470 0.26 -1.8
1,530,644 + OLJFJH_07470 0.29 +0.2
1,530,691 + OLJFJH_07470 0.33 -2.1
1,530,750 + OLJFJH_07470 0.39 -1.5
1,530,751 - OLJFJH_07470 0.39 -0.5
1,530,786 - OLJFJH_07470 0.42 -1.2
1,530,795 - OLJFJH_07470 0.43 -0.2
1,530,812 + OLJFJH_07470 0.44 -3.1
1,530,813 - OLJFJH_07470 0.44 -0.4
1,530,841 - OLJFJH_07470 0.47 -0.9
1,530,905 - OLJFJH_07470 0.53 -2.5
1,531,000 - OLJFJH_07470 0.62 -1.8
1,531,042 - OLJFJH_07470 0.66 -1.4
1,531,042 - OLJFJH_07470 0.66 -0.1
1,531,113 + OLJFJH_07470 0.72 -0.4
1,531,114 - OLJFJH_07470 0.72 -0.2
1,531,195 + OLJFJH_07470 0.80 +1.8
1,531,196 - OLJFJH_07470 0.80 -2.4
1,531,196 - OLJFJH_07470 0.80 -0.9
1,531,256 + OLJFJH_07470 0.85 -4.1
1,531,256 + OLJFJH_07470 0.85 -1.0

Or see this region's nucleotide sequence