Strain Fitness in Erwinia amylovora T8 around OLJFJH_07380

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_07370 and OLJFJH_07375 are separated by 5 nucleotidesOLJFJH_07375 and OLJFJH_07380 are separated by 124 nucleotidesOLJFJH_07380 and OLJFJH_07390 are separated by 253 nucleotides OLJFJH_07370: OLJFJH_07370 - valine--tRNA ligase, at 1,502,472 to 1,505,327 _07370 OLJFJH_07375: OLJFJH_07375 - DNA polymerase III subunit chi, at 1,505,333 to 1,505,788 _07375 OLJFJH_07380: OLJFJH_07380 - leucyl aminopeptidase, at 1,505,913 to 1,507,424 _07380 OLJFJH_07390: OLJFJH_07390 - LPS export ABC transporter permease LptF, at 1,507,678 to 1,508,778 _07390 Position (kb) 1505 1506 1507 1508Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1506.044 kb on - strandat 1506.332 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.415 kb on - strand, within OLJFJH_07380at 1506.524 kb on - strand, within OLJFJH_07380at 1506.550 kb on + strand, within OLJFJH_07380at 1506.551 kb on - strand, within OLJFJH_07380at 1506.551 kb on - strand, within OLJFJH_07380at 1506.664 kb on + strand, within OLJFJH_07380at 1506.664 kb on + strand, within OLJFJH_07380at 1506.664 kb on + strand, within OLJFJH_07380at 1506.719 kb on - strand, within OLJFJH_07380at 1506.773 kb on + strand, within OLJFJH_07380at 1506.784 kb on + strand, within OLJFJH_07380at 1506.837 kb on - strand, within OLJFJH_07380at 1506.986 kb on + strand, within OLJFJH_07380at 1506.987 kb on - strand, within OLJFJH_07380at 1507.012 kb on + strand, within OLJFJH_07380at 1507.058 kb on - strand, within OLJFJH_07380at 1507.130 kb on + strand, within OLJFJH_07380at 1507.239 kb on + strand, within OLJFJH_07380at 1507.239 kb on + strand, within OLJFJH_07380at 1507.239 kb on + strand, within OLJFJH_07380at 1507.239 kb on + strand, within OLJFJH_07380at 1507.239 kb on + strand, within OLJFJH_07380at 1507.240 kb on - strand, within OLJFJH_07380at 1507.240 kb on - strand, within OLJFJH_07380at 1507.240 kb on - strand, within OLJFJH_07380at 1507.240 kb on - strand, within OLJFJH_07380at 1507.240 kb on - strand, within OLJFJH_07380at 1507.262 kb on + strand, within OLJFJH_07380at 1507.262 kb on + strand, within OLJFJH_07380at 1507.263 kb on - strand, within OLJFJH_07380at 1507.298 kb on + strandat 1507.298 kb on + strandat 1507.299 kb on - strandat 1507.299 kb on - strandat 1507.300 kb on + strandat 1507.410 kb on + strandat 1507.426 kb on + strandat 1507.426 kb on + strandat 1507.426 kb on + strandat 1507.427 kb on - strandat 1507.490 kb on - strandat 1507.504 kb on + strandat 1507.505 kb on - strandat 1507.505 kb on - strandat 1507.576 kb on + strandat 1507.576 kb on + strandat 1507.576 kb on + strandat 1507.585 kb on + strandat 1507.617 kb on + strandat 1507.617 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
remove
1,506,044 - -1.0
1,506,332 - OLJFJH_07380 0.28 -3.0
1,506,415 - OLJFJH_07380 0.33 -1.9
1,506,415 - OLJFJH_07380 0.33 -2.6
1,506,415 - OLJFJH_07380 0.33 -2.1
1,506,415 - OLJFJH_07380 0.33 -1.3
1,506,415 - OLJFJH_07380 0.33 -2.9
1,506,415 - OLJFJH_07380 0.33 -1.3
1,506,415 - OLJFJH_07380 0.33 -1.0
1,506,415 - OLJFJH_07380 0.33 -2.1
1,506,415 - OLJFJH_07380 0.33 -1.5
1,506,415 - OLJFJH_07380 0.33 -1.1
1,506,524 - OLJFJH_07380 0.40 -0.1
1,506,550 + OLJFJH_07380 0.42 +0.2
1,506,551 - OLJFJH_07380 0.42 -1.7
1,506,551 - OLJFJH_07380 0.42 -1.3
1,506,664 + OLJFJH_07380 0.50 -3.5
1,506,664 + OLJFJH_07380 0.50 -2.6
1,506,664 + OLJFJH_07380 0.50 -2.8
1,506,719 - OLJFJH_07380 0.53 -2.0
1,506,773 + OLJFJH_07380 0.57 -1.1
1,506,784 + OLJFJH_07380 0.58 -1.4
1,506,837 - OLJFJH_07380 0.61 -1.5
1,506,986 + OLJFJH_07380 0.71 -1.0
1,506,987 - OLJFJH_07380 0.71 -3.1
1,507,012 + OLJFJH_07380 0.73 -2.6
1,507,058 - OLJFJH_07380 0.76 -0.5
1,507,130 + OLJFJH_07380 0.80 -1.6
1,507,239 + OLJFJH_07380 0.88 -0.3
1,507,239 + OLJFJH_07380 0.88 -0.5
1,507,239 + OLJFJH_07380 0.88 +1.8
1,507,239 + OLJFJH_07380 0.88 -2.8
1,507,239 + OLJFJH_07380 0.88 -2.2
1,507,240 - OLJFJH_07380 0.88 -0.2
1,507,240 - OLJFJH_07380 0.88 -1.3
1,507,240 - OLJFJH_07380 0.88 -1.7
1,507,240 - OLJFJH_07380 0.88 -0.7
1,507,240 - OLJFJH_07380 0.88 -2.0
1,507,262 + OLJFJH_07380 0.89 -2.4
1,507,262 + OLJFJH_07380 0.89 +0.7
1,507,263 - OLJFJH_07380 0.89 -1.8
1,507,298 + -1.2
1,507,298 + -2.3
1,507,299 - +0.0
1,507,299 - -2.7
1,507,300 + -0.8
1,507,410 + -2.2
1,507,426 + -0.2
1,507,426 + -1.7
1,507,426 + +0.8
1,507,427 - -0.9
1,507,490 - +1.5
1,507,504 + -0.1
1,507,505 - +0.5
1,507,505 - +0.1
1,507,576 + -2.3
1,507,576 + -1.9
1,507,576 + -0.5
1,507,585 + -1.1
1,507,617 + -1.6
1,507,617 + -0.5

Or see this region's nucleotide sequence