Strain Fitness in Erwinia amylovora T8 around OLJFJH_07100

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07095 and OLJFJH_07100 are separated by 11 nucleotidesOLJFJH_07100 and OLJFJH_07105 are separated by 223 nucleotides OLJFJH_07095: OLJFJH_07095 - arabinose-5-phosphate isomerase KdsD, at 1,448,167 to 1,449,156 _07095 OLJFJH_07100: OLJFJH_07100 - calcium/sodium antiporter, at 1,449,168 to 1,450,148 _07100 OLJFJH_07105: OLJFJH_07105 - phospholipid ABC transporter ATP-binding protein MlaF, at 1,450,372 to 1,451,184 _07105 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1448.168 kb on + strandat 1448.250 kb on + strandat 1448.250 kb on + strandat 1448.292 kb on + strand, within OLJFJH_07095at 1448.352 kb on + strand, within OLJFJH_07095at 1448.713 kb on - strand, within OLJFJH_07095at 1448.773 kb on + strand, within OLJFJH_07095at 1448.773 kb on + strand, within OLJFJH_07095at 1448.773 kb on + strand, within OLJFJH_07095at 1448.773 kb on + strand, within OLJFJH_07095at 1448.776 kb on + strand, within OLJFJH_07095at 1448.776 kb on + strand, within OLJFJH_07095at 1448.776 kb on + strand, within OLJFJH_07095at 1448.776 kb on + strand, within OLJFJH_07095at 1448.777 kb on - strand, within OLJFJH_07095at 1448.841 kb on + strand, within OLJFJH_07095at 1448.911 kb on + strand, within OLJFJH_07095at 1448.998 kb on + strand, within OLJFJH_07095at 1448.998 kb on + strand, within OLJFJH_07095at 1448.998 kb on + strand, within OLJFJH_07095at 1448.999 kb on - strand, within OLJFJH_07095at 1448.999 kb on - strand, within OLJFJH_07095at 1449.219 kb on - strandat 1449.219 kb on - strandat 1449.287 kb on + strand, within OLJFJH_07100at 1449.287 kb on + strand, within OLJFJH_07100at 1449.288 kb on - strand, within OLJFJH_07100at 1449.288 kb on - strand, within OLJFJH_07100at 1449.360 kb on + strand, within OLJFJH_07100at 1449.361 kb on - strand, within OLJFJH_07100at 1449.361 kb on - strand, within OLJFJH_07100at 1449.361 kb on - strand, within OLJFJH_07100at 1449.395 kb on + strand, within OLJFJH_07100at 1449.397 kb on + strand, within OLJFJH_07100at 1449.398 kb on - strand, within OLJFJH_07100at 1449.398 kb on - strand, within OLJFJH_07100at 1449.401 kb on + strand, within OLJFJH_07100at 1449.401 kb on + strand, within OLJFJH_07100at 1449.401 kb on + strand, within OLJFJH_07100at 1449.404 kb on + strand, within OLJFJH_07100at 1449.405 kb on - strand, within OLJFJH_07100at 1449.411 kb on + strand, within OLJFJH_07100at 1449.412 kb on - strand, within OLJFJH_07100at 1449.500 kb on + strand, within OLJFJH_07100at 1449.500 kb on + strand, within OLJFJH_07100at 1449.500 kb on + strand, within OLJFJH_07100at 1449.501 kb on - strand, within OLJFJH_07100at 1449.501 kb on - strand, within OLJFJH_07100at 1449.501 kb on - strand, within OLJFJH_07100at 1449.539 kb on - strand, within OLJFJH_07100at 1449.539 kb on - strand, within OLJFJH_07100at 1449.630 kb on - strand, within OLJFJH_07100at 1449.733 kb on + strand, within OLJFJH_07100at 1449.807 kb on + strand, within OLJFJH_07100at 1449.807 kb on + strand, within OLJFJH_07100at 1450.010 kb on + strand, within OLJFJH_07100at 1450.025 kb on + strand, within OLJFJH_07100at 1450.031 kb on + strand, within OLJFJH_07100at 1450.031 kb on + strand, within OLJFJH_07100at 1450.062 kb on + strandat 1450.067 kb on + strandat 1450.067 kb on + strandat 1450.068 kb on - strandat 1450.108 kb on - strandat 1450.128 kb on + strandat 1450.129 kb on - strandat 1450.162 kb on - strandat 1450.171 kb on + strandat 1450.188 kb on - strandat 1450.198 kb on - strandat 1450.248 kb on + strandat 1450.265 kb on + strandat 1450.265 kb on + strandat 1450.270 kb on + strandat 1450.270 kb on + strandat 1450.271 kb on - strandat 1450.278 kb on - strandat 1450.316 kb on + strandat 1450.316 kb on + strandat 1450.316 kb on + strandat 1450.319 kb on + strandat 1450.319 kb on + strandat 1450.320 kb on - strandat 1450.320 kb on - strandat 1450.320 kb on - strandat 1450.368 kb on - strandat 1450.372 kb on - strandat 1450.485 kb on + strand, within OLJFJH_07105at 1450.486 kb on - strand, within OLJFJH_07105at 1450.565 kb on + strand, within OLJFJH_07105at 1450.612 kb on + strand, within OLJFJH_07105at 1450.676 kb on + strand, within OLJFJH_07105at 1450.676 kb on + strand, within OLJFJH_07105at 1450.869 kb on + strand, within OLJFJH_07105at 1450.902 kb on + strand, within OLJFJH_07105at 1450.902 kb on + strand, within OLJFJH_07105at 1450.916 kb on + strand, within OLJFJH_07105at 1450.916 kb on + strand, within OLJFJH_07105at 1450.917 kb on - strand, within OLJFJH_07105at 1450.917 kb on - strand, within OLJFJH_07105at 1451.017 kb on + strand, within OLJFJH_07105at 1451.017 kb on + strand, within OLJFJH_07105at 1451.017 kb on + strand, within OLJFJH_07105at 1451.018 kb on - strand, within OLJFJH_07105at 1451.019 kb on + strand, within OLJFJH_07105at 1451.019 kb on + strand, within OLJFJH_07105at 1451.019 kb on + strand, within OLJFJH_07105at 1451.019 kb on + strand, within OLJFJH_07105at 1451.020 kb on - strand, within OLJFJH_07105at 1451.020 kb on - strand, within OLJFJH_07105at 1451.022 kb on + strand, within OLJFJH_07105at 1451.022 kb on + strand, within OLJFJH_07105at 1451.022 kb on + strand, within OLJFJH_07105at 1451.023 kb on - strand, within OLJFJH_07105at 1451.110 kb on - strandat 1451.110 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,448,168 + -1.3
1,448,250 + +0.9
1,448,250 + -0.9
1,448,292 + OLJFJH_07095 0.13 +0.7
1,448,352 + OLJFJH_07095 0.19 -2.9
1,448,713 - OLJFJH_07095 0.55 -0.0
1,448,773 + OLJFJH_07095 0.61 -0.3
1,448,773 + OLJFJH_07095 0.61 +0.3
1,448,773 + OLJFJH_07095 0.61 -0.3
1,448,773 + OLJFJH_07095 0.61 +0.4
1,448,776 + OLJFJH_07095 0.62 -0.4
1,448,776 + OLJFJH_07095 0.62 -0.3
1,448,776 + OLJFJH_07095 0.62 +0.2
1,448,776 + OLJFJH_07095 0.62 -1.6
1,448,777 - OLJFJH_07095 0.62 -0.9
1,448,841 + OLJFJH_07095 0.68 +0.9
1,448,911 + OLJFJH_07095 0.75 -0.6
1,448,998 + OLJFJH_07095 0.84 -0.5
1,448,998 + OLJFJH_07095 0.84 -0.7
1,448,998 + OLJFJH_07095 0.84 +0.4
1,448,999 - OLJFJH_07095 0.84 -0.3
1,448,999 - OLJFJH_07095 0.84 +0.9
1,449,219 - -2.9
1,449,219 - -3.4
1,449,287 + OLJFJH_07100 0.12 -0.3
1,449,287 + OLJFJH_07100 0.12 -2.0
1,449,288 - OLJFJH_07100 0.12 -2.1
1,449,288 - OLJFJH_07100 0.12 -3.7
1,449,360 + OLJFJH_07100 0.20 -3.5
1,449,361 - OLJFJH_07100 0.20 -3.2
1,449,361 - OLJFJH_07100 0.20 -2.9
1,449,361 - OLJFJH_07100 0.20 -4.8
1,449,395 + OLJFJH_07100 0.23 -3.2
1,449,397 + OLJFJH_07100 0.23 -2.2
1,449,398 - OLJFJH_07100 0.23 -2.6
1,449,398 - OLJFJH_07100 0.23 -1.1
1,449,401 + OLJFJH_07100 0.24 -2.2
1,449,401 + OLJFJH_07100 0.24 -2.4
1,449,401 + OLJFJH_07100 0.24 -2.8
1,449,404 + OLJFJH_07100 0.24 -1.5
1,449,405 - OLJFJH_07100 0.24 -5.4
1,449,411 + OLJFJH_07100 0.25 -2.9
1,449,412 - OLJFJH_07100 0.25 -1.1
1,449,500 + OLJFJH_07100 0.34 -3.2
1,449,500 + OLJFJH_07100 0.34 -0.7
1,449,500 + OLJFJH_07100 0.34 -2.2
1,449,501 - OLJFJH_07100 0.34 -2.3
1,449,501 - OLJFJH_07100 0.34 -1.7
1,449,501 - OLJFJH_07100 0.34 -2.2
1,449,539 - OLJFJH_07100 0.38 -3.0
1,449,539 - OLJFJH_07100 0.38 -3.2
1,449,630 - OLJFJH_07100 0.47 -1.8
1,449,733 + OLJFJH_07100 0.58 -3.0
1,449,807 + OLJFJH_07100 0.65 -3.0
1,449,807 + OLJFJH_07100 0.65 -3.0
1,450,010 + OLJFJH_07100 0.86 -2.7
1,450,025 + OLJFJH_07100 0.87 -3.2
1,450,031 + OLJFJH_07100 0.88 -3.9
1,450,031 + OLJFJH_07100 0.88 -2.0
1,450,062 + -2.9
1,450,067 + -1.7
1,450,067 + -4.2
1,450,068 - -1.8
1,450,108 - -3.8
1,450,128 + -1.1
1,450,129 - -2.9
1,450,162 - +2.6
1,450,171 + -0.1
1,450,188 - -0.2
1,450,198 - +0.5
1,450,248 + -1.5
1,450,265 + -0.3
1,450,265 + -0.3
1,450,270 + +0.3
1,450,270 + -0.5
1,450,271 - +0.6
1,450,278 - -1.3
1,450,316 + +0.1
1,450,316 + +0.5
1,450,316 + -0.4
1,450,319 + -1.5
1,450,319 + +0.6
1,450,320 - -0.7
1,450,320 - -0.3
1,450,320 - +0.1
1,450,368 - -1.3
1,450,372 - -1.9
1,450,485 + OLJFJH_07105 0.14 -1.7
1,450,486 - OLJFJH_07105 0.14 +0.2
1,450,565 + OLJFJH_07105 0.24 -2.5
1,450,612 + OLJFJH_07105 0.30 +0.3
1,450,676 + OLJFJH_07105 0.37 -1.1
1,450,676 + OLJFJH_07105 0.37 -1.4
1,450,869 + OLJFJH_07105 0.61 -1.0
1,450,902 + OLJFJH_07105 0.65 -0.1
1,450,902 + OLJFJH_07105 0.65 -1.2
1,450,916 + OLJFJH_07105 0.67 -1.4
1,450,916 + OLJFJH_07105 0.67 -1.0
1,450,917 - OLJFJH_07105 0.67 -0.1
1,450,917 - OLJFJH_07105 0.67 -0.6
1,451,017 + OLJFJH_07105 0.79 -1.6
1,451,017 + OLJFJH_07105 0.79 -1.2
1,451,017 + OLJFJH_07105 0.79 -1.1
1,451,018 - OLJFJH_07105 0.79 -0.5
1,451,019 + OLJFJH_07105 0.80 -1.2
1,451,019 + OLJFJH_07105 0.80 -1.8
1,451,019 + OLJFJH_07105 0.80 -1.1
1,451,019 + OLJFJH_07105 0.80 -0.8
1,451,020 - OLJFJH_07105 0.80 -1.6
1,451,020 - OLJFJH_07105 0.80 -1.5
1,451,022 + OLJFJH_07105 0.80 -2.0
1,451,022 + OLJFJH_07105 0.80 -1.5
1,451,022 + OLJFJH_07105 0.80 -1.5
1,451,023 - OLJFJH_07105 0.80 -1.9
1,451,110 - -1.1
1,451,110 - -0.9

Or see this region's nucleotide sequence