Strain Fitness in Erwinia amylovora T8 around OLJFJH_06290

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06285 and OLJFJH_06290 are separated by 49 nucleotidesOLJFJH_06290 and OLJFJH_06295 are separated by 4 nucleotides OLJFJH_06285: OLJFJH_06285 - ECA polysaccharide chain length modulation protein, at 1,273,569 to 1,274,597 _06285 OLJFJH_06290: OLJFJH_06290 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 1,274,647 to 1,275,768 _06290 OLJFJH_06295: OLJFJH_06295 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 1,275,773 to 1,277,035 _06295 Position (kb) 1274 1275 1276Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1273.689 kb on + strand, within OLJFJH_06285at 1273.689 kb on + strand, within OLJFJH_06285at 1273.690 kb on - strand, within OLJFJH_06285at 1273.719 kb on - strand, within OLJFJH_06285at 1273.811 kb on + strand, within OLJFJH_06285at 1273.917 kb on + strand, within OLJFJH_06285at 1274.074 kb on + strand, within OLJFJH_06285at 1274.082 kb on + strand, within OLJFJH_06285at 1274.082 kb on + strand, within OLJFJH_06285at 1274.083 kb on - strand, within OLJFJH_06285at 1274.083 kb on - strand, within OLJFJH_06285at 1274.120 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.165 kb on - strand, within OLJFJH_06285at 1274.208 kb on + strand, within OLJFJH_06285at 1274.336 kb on + strand, within OLJFJH_06285at 1274.337 kb on - strand, within OLJFJH_06285at 1274.341 kb on + strand, within OLJFJH_06285at 1274.382 kb on + strand, within OLJFJH_06285at 1274.395 kb on - strand, within OLJFJH_06285at 1274.395 kb on - strand, within OLJFJH_06285at 1274.469 kb on + strand, within OLJFJH_06285at 1274.521 kb on + strandat 1274.525 kb on + strandat 1274.525 kb on + strandat 1274.525 kb on + strandat 1274.525 kb on + strandat 1274.526 kb on - strandat 1274.526 kb on - strandat 1274.526 kb on - strandat 1274.526 kb on - strandat 1274.551 kb on + strandat 1274.555 kb on - strandat 1274.654 kb on + strandat 1274.733 kb on - strandat 1274.820 kb on + strand, within OLJFJH_06290at 1274.821 kb on - strand, within OLJFJH_06290at 1274.821 kb on - strand, within OLJFJH_06290at 1274.823 kb on + strand, within OLJFJH_06290at 1274.823 kb on + strand, within OLJFJH_06290at 1274.823 kb on + strand, within OLJFJH_06290at 1274.824 kb on - strand, within OLJFJH_06290at 1274.824 kb on - strand, within OLJFJH_06290at 1274.824 kb on - strand, within OLJFJH_06290at 1274.824 kb on - strand, within OLJFJH_06290at 1274.889 kb on - strand, within OLJFJH_06290at 1274.969 kb on - strand, within OLJFJH_06290at 1274.969 kb on - strand, within OLJFJH_06290at 1275.076 kb on + strand, within OLJFJH_06290at 1275.129 kb on - strand, within OLJFJH_06290at 1275.129 kb on - strand, within OLJFJH_06290at 1275.253 kb on - strand, within OLJFJH_06290at 1275.318 kb on + strand, within OLJFJH_06290at 1275.319 kb on - strand, within OLJFJH_06290at 1275.319 kb on - strand, within OLJFJH_06290at 1275.319 kb on - strand, within OLJFJH_06290at 1275.319 kb on - strand, within OLJFJH_06290at 1275.381 kb on - strand, within OLJFJH_06290at 1275.387 kb on + strand, within OLJFJH_06290at 1275.388 kb on - strand, within OLJFJH_06290at 1275.388 kb on - strand, within OLJFJH_06290at 1275.447 kb on + strand, within OLJFJH_06290at 1275.463 kb on + strand, within OLJFJH_06290at 1275.463 kb on + strand, within OLJFJH_06290at 1275.705 kb on + strandat 1275.712 kb on + strandat 1275.739 kb on - strandat 1275.809 kb on + strandat 1275.810 kb on - strandat 1275.810 kb on - strandat 1275.865 kb on + strandat 1275.871 kb on + strandat 1276.061 kb on + strand, within OLJFJH_06295at 1276.062 kb on - strand, within OLJFJH_06295at 1276.239 kb on - strand, within OLJFJH_06295at 1276.269 kb on + strand, within OLJFJH_06295at 1276.270 kb on - strand, within OLJFJH_06295at 1276.346 kb on + strand, within OLJFJH_06295at 1276.346 kb on + strand, within OLJFJH_06295at 1276.347 kb on + strand, within OLJFJH_06295at 1276.347 kb on - strand, within OLJFJH_06295at 1276.405 kb on + strand, within OLJFJH_06295at 1276.406 kb on - strand, within OLJFJH_06295at 1276.406 kb on - strand, within OLJFJH_06295at 1276.471 kb on + strand, within OLJFJH_06295at 1276.591 kb on + strand, within OLJFJH_06295at 1276.680 kb on + strand, within OLJFJH_06295at 1276.681 kb on - strand, within OLJFJH_06295at 1276.681 kb on - strand, within OLJFJH_06295

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,273,689 + OLJFJH_06285 0.12 -1.3
1,273,689 + OLJFJH_06285 0.12 -1.0
1,273,690 - OLJFJH_06285 0.12 -0.7
1,273,719 - OLJFJH_06285 0.15 -0.7
1,273,811 + OLJFJH_06285 0.24 -1.8
1,273,917 + OLJFJH_06285 0.34 -1.3
1,274,074 + OLJFJH_06285 0.49 -0.3
1,274,082 + OLJFJH_06285 0.50 -1.3
1,274,082 + OLJFJH_06285 0.50 -0.4
1,274,083 - OLJFJH_06285 0.50 -2.8
1,274,083 - OLJFJH_06285 0.50 -1.2
1,274,120 + OLJFJH_06285 0.54 -0.1
1,274,158 + OLJFJH_06285 0.57 -1.6
1,274,158 + OLJFJH_06285 0.57 -0.3
1,274,158 + OLJFJH_06285 0.57 -0.7
1,274,158 + OLJFJH_06285 0.57 -1.1
1,274,158 + OLJFJH_06285 0.57 -0.7
1,274,158 + OLJFJH_06285 0.57 -1.0
1,274,165 - OLJFJH_06285 0.58 -1.3
1,274,208 + OLJFJH_06285 0.62 -1.4
1,274,336 + OLJFJH_06285 0.75 -1.2
1,274,337 - OLJFJH_06285 0.75 -2.7
1,274,341 + OLJFJH_06285 0.75 -1.3
1,274,382 + OLJFJH_06285 0.79 -1.6
1,274,395 - OLJFJH_06285 0.80 -0.9
1,274,395 - OLJFJH_06285 0.80 -1.3
1,274,469 + OLJFJH_06285 0.87 -1.7
1,274,521 + -1.2
1,274,525 + -0.6
1,274,525 + -1.2
1,274,525 + -1.0
1,274,525 + -2.1
1,274,526 - -3.1
1,274,526 - -0.8
1,274,526 - -1.7
1,274,526 - -1.1
1,274,551 + -1.5
1,274,555 - -1.0
1,274,654 + -1.3
1,274,733 - -4.8
1,274,820 + OLJFJH_06290 0.15 -2.4
1,274,821 - OLJFJH_06290 0.16 -0.4
1,274,821 - OLJFJH_06290 0.16 -2.9
1,274,823 + OLJFJH_06290 0.16 -0.9
1,274,823 + OLJFJH_06290 0.16 -1.8
1,274,823 + OLJFJH_06290 0.16 -2.1
1,274,824 - OLJFJH_06290 0.16 -2.6
1,274,824 - OLJFJH_06290 0.16 -1.5
1,274,824 - OLJFJH_06290 0.16 -2.1
1,274,824 - OLJFJH_06290 0.16 -1.0
1,274,889 - OLJFJH_06290 0.22 -1.8
1,274,969 - OLJFJH_06290 0.29 -2.1
1,274,969 - OLJFJH_06290 0.29 -4.0
1,275,076 + OLJFJH_06290 0.38 -4.3
1,275,129 - OLJFJH_06290 0.43 -1.4
1,275,129 - OLJFJH_06290 0.43 -3.0
1,275,253 - OLJFJH_06290 0.54 -1.2
1,275,318 + OLJFJH_06290 0.60 -3.0
1,275,319 - OLJFJH_06290 0.60 -3.1
1,275,319 - OLJFJH_06290 0.60 -2.7
1,275,319 - OLJFJH_06290 0.60 -2.6
1,275,319 - OLJFJH_06290 0.60 -1.1
1,275,381 - OLJFJH_06290 0.65 -2.8
1,275,387 + OLJFJH_06290 0.66 -1.1
1,275,388 - OLJFJH_06290 0.66 -3.2
1,275,388 - OLJFJH_06290 0.66 -1.7
1,275,447 + OLJFJH_06290 0.71 -3.1
1,275,463 + OLJFJH_06290 0.73 -2.3
1,275,463 + OLJFJH_06290 0.73 -3.1
1,275,705 + -3.5
1,275,712 + -1.2
1,275,739 - -2.0
1,275,809 + -2.2
1,275,810 - -3.3
1,275,810 - -1.0
1,275,865 + -0.7
1,275,871 + -1.0
1,276,061 + OLJFJH_06295 0.23 -2.3
1,276,062 - OLJFJH_06295 0.23 -0.5
1,276,239 - OLJFJH_06295 0.37 -2.2
1,276,269 + OLJFJH_06295 0.39 -1.0
1,276,270 - OLJFJH_06295 0.39 -1.1
1,276,346 + OLJFJH_06295 0.45 -2.8
1,276,346 + OLJFJH_06295 0.45 -3.2
1,276,347 + OLJFJH_06295 0.45 -1.4
1,276,347 - OLJFJH_06295 0.45 -0.2
1,276,405 + OLJFJH_06295 0.50 -2.4
1,276,406 - OLJFJH_06295 0.50 -2.0
1,276,406 - OLJFJH_06295 0.50 -3.4
1,276,471 + OLJFJH_06295 0.55 -1.1
1,276,591 + OLJFJH_06295 0.65 -3.3
1,276,680 + OLJFJH_06295 0.72 -2.8
1,276,681 - OLJFJH_06295 0.72 -1.2
1,276,681 - OLJFJH_06295 0.72 -1.5

Or see this region's nucleotide sequence