Strain Fitness in Erwinia amylovora T8 around OLJFJH_06280

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_06275 and OLJFJH_06280 are separated by 291 nucleotidesOLJFJH_06280 and OLJFJH_06285 are separated by 26 nucleotides OLJFJH_06275: OLJFJH_06275 - transcription termination factor Rho, at 1,270,885 to 1,272,144 _06275 OLJFJH_06280: OLJFJH_06280 - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 1,272,436 to 1,273,542 _06280 OLJFJH_06285: OLJFJH_06285 - ECA polysaccharide chain length modulation protein, at 1,273,569 to 1,274,597 _06285 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1272.142 kb on + strandat 1272.150 kb on + strandat 1272.162 kb on - strandat 1272.206 kb on + strandat 1272.206 kb on + strandat 1272.207 kb on - strandat 1272.238 kb on - strandat 1272.267 kb on + strandat 1272.268 kb on - strandat 1272.268 kb on - strandat 1272.291 kb on + strandat 1272.298 kb on + strandat 1272.299 kb on - strandat 1272.299 kb on - strandat 1272.301 kb on + strandat 1272.301 kb on + strandat 1272.302 kb on - strandat 1272.304 kb on - strandat 1272.304 kb on - strandat 1272.304 kb on - strandat 1272.304 kb on - strandat 1272.304 kb on - strandat 1272.305 kb on - strandat 1272.338 kb on + strandat 1272.443 kb on + strandat 1272.443 kb on + strandat 1272.510 kb on + strandat 1272.546 kb on + strandat 1272.547 kb on - strand, within OLJFJH_06280at 1272.547 kb on - strand, within OLJFJH_06280at 1272.547 kb on - strand, within OLJFJH_06280at 1272.547 kb on - strand, within OLJFJH_06280at 1272.547 kb on - strand, within OLJFJH_06280at 1272.550 kb on + strand, within OLJFJH_06280at 1272.624 kb on + strand, within OLJFJH_06280at 1272.651 kb on + strand, within OLJFJH_06280at 1272.651 kb on + strand, within OLJFJH_06280at 1272.651 kb on + strand, within OLJFJH_06280at 1272.651 kb on + strand, within OLJFJH_06280at 1272.652 kb on - strand, within OLJFJH_06280at 1272.652 kb on - strand, within OLJFJH_06280at 1272.788 kb on - strand, within OLJFJH_06280at 1272.788 kb on - strand, within OLJFJH_06280at 1272.796 kb on - strand, within OLJFJH_06280at 1272.806 kb on - strand, within OLJFJH_06280at 1272.807 kb on + strand, within OLJFJH_06280at 1272.808 kb on - strand, within OLJFJH_06280at 1272.808 kb on - strand, within OLJFJH_06280at 1272.984 kb on + strand, within OLJFJH_06280at 1273.031 kb on - strand, within OLJFJH_06280at 1273.031 kb on - strand, within OLJFJH_06280at 1273.033 kb on - strand, within OLJFJH_06280at 1273.033 kb on - strand, within OLJFJH_06280at 1273.035 kb on + strand, within OLJFJH_06280at 1273.035 kb on + strand, within OLJFJH_06280at 1273.035 kb on + strand, within OLJFJH_06280at 1273.035 kb on + strand, within OLJFJH_06280at 1273.035 kb on + strand, within OLJFJH_06280at 1273.035 kb on + strand, within OLJFJH_06280at 1273.035 kb on + strand, within OLJFJH_06280at 1273.036 kb on - strand, within OLJFJH_06280at 1273.036 kb on - strand, within OLJFJH_06280at 1273.036 kb on - strand, within OLJFJH_06280at 1273.036 kb on - strand, within OLJFJH_06280at 1273.078 kb on - strand, within OLJFJH_06280at 1273.078 kb on - strand, within OLJFJH_06280at 1273.110 kb on + strand, within OLJFJH_06280at 1273.111 kb on - strand, within OLJFJH_06280at 1273.111 kb on - strand, within OLJFJH_06280at 1273.113 kb on + strand, within OLJFJH_06280at 1273.117 kb on - strand, within OLJFJH_06280at 1273.117 kb on - strand, within OLJFJH_06280at 1273.207 kb on - strand, within OLJFJH_06280at 1273.218 kb on + strand, within OLJFJH_06280at 1273.219 kb on - strand, within OLJFJH_06280at 1273.219 kb on - strand, within OLJFJH_06280at 1273.219 kb on - strand, within OLJFJH_06280at 1273.272 kb on + strand, within OLJFJH_06280at 1273.273 kb on - strand, within OLJFJH_06280at 1273.273 kb on - strand, within OLJFJH_06280at 1273.273 kb on - strand, within OLJFJH_06280at 1273.273 kb on - strand, within OLJFJH_06280at 1273.273 kb on - strand, within OLJFJH_06280at 1273.273 kb on - strand, within OLJFJH_06280at 1273.303 kb on - strand, within OLJFJH_06280at 1273.428 kb on + strand, within OLJFJH_06280at 1273.435 kb on + strandat 1273.506 kb on + strandat 1273.521 kb on + strandat 1273.522 kb on - strandat 1273.568 kb on + strandat 1273.569 kb on - strandat 1273.689 kb on + strand, within OLJFJH_06285at 1273.689 kb on + strand, within OLJFJH_06285at 1273.690 kb on - strand, within OLJFJH_06285at 1273.719 kb on - strand, within OLJFJH_06285at 1273.811 kb on + strand, within OLJFJH_06285at 1273.917 kb on + strand, within OLJFJH_06285at 1274.074 kb on + strand, within OLJFJH_06285at 1274.082 kb on + strand, within OLJFJH_06285at 1274.082 kb on + strand, within OLJFJH_06285at 1274.083 kb on - strand, within OLJFJH_06285at 1274.083 kb on - strand, within OLJFJH_06285at 1274.120 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.158 kb on + strand, within OLJFJH_06285at 1274.165 kb on - strand, within OLJFJH_06285at 1274.208 kb on + strand, within OLJFJH_06285at 1274.336 kb on + strand, within OLJFJH_06285at 1274.337 kb on - strand, within OLJFJH_06285at 1274.341 kb on + strand, within OLJFJH_06285at 1274.382 kb on + strand, within OLJFJH_06285at 1274.395 kb on - strand, within OLJFJH_06285at 1274.395 kb on - strand, within OLJFJH_06285at 1274.469 kb on + strand, within OLJFJH_06285at 1274.521 kb on + strandat 1274.525 kb on + strandat 1274.525 kb on + strandat 1274.525 kb on + strandat 1274.525 kb on + strandat 1274.526 kb on - strandat 1274.526 kb on - strandat 1274.526 kb on - strandat 1274.526 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
remove
1,272,142 + +1.3
1,272,150 + +0.2
1,272,162 - +0.3
1,272,206 + +0.6
1,272,206 + +1.2
1,272,207 - -0.7
1,272,238 - +0.5
1,272,267 + +0.6
1,272,268 - -1.4
1,272,268 - -0.8
1,272,291 + +0.2
1,272,298 + +0.1
1,272,299 - -0.4
1,272,299 - -0.6
1,272,301 + +0.8
1,272,301 + +0.5
1,272,302 - -1.4
1,272,304 - -1.2
1,272,304 - -0.9
1,272,304 - +0.2
1,272,304 - -0.5
1,272,304 - -1.2
1,272,305 - -1.9
1,272,338 + +1.1
1,272,443 + -1.2
1,272,443 + -1.2
1,272,510 + -2.2
1,272,546 + -2.6
1,272,547 - OLJFJH_06280 0.10 -2.2
1,272,547 - OLJFJH_06280 0.10 -2.6
1,272,547 - OLJFJH_06280 0.10 -1.8
1,272,547 - OLJFJH_06280 0.10 -1.9
1,272,547 - OLJFJH_06280 0.10 -0.8
1,272,550 + OLJFJH_06280 0.10 -2.5
1,272,624 + OLJFJH_06280 0.17 -0.4
1,272,651 + OLJFJH_06280 0.19 -1.2
1,272,651 + OLJFJH_06280 0.19 -2.8
1,272,651 + OLJFJH_06280 0.19 -1.4
1,272,651 + OLJFJH_06280 0.19 -1.1
1,272,652 - OLJFJH_06280 0.20 -1.7
1,272,652 - OLJFJH_06280 0.20 -1.6
1,272,788 - OLJFJH_06280 0.32 -0.8
1,272,788 - OLJFJH_06280 0.32 +0.9
1,272,796 - OLJFJH_06280 0.33 -2.5
1,272,806 - OLJFJH_06280 0.33 -0.1
1,272,807 + OLJFJH_06280 0.34 -2.3
1,272,808 - OLJFJH_06280 0.34 -2.9
1,272,808 - OLJFJH_06280 0.34 -2.6
1,272,984 + OLJFJH_06280 0.50 -0.2
1,273,031 - OLJFJH_06280 0.54 -1.5
1,273,031 - OLJFJH_06280 0.54 -1.3
1,273,033 - OLJFJH_06280 0.54 -0.8
1,273,033 - OLJFJH_06280 0.54 -2.8
1,273,035 + OLJFJH_06280 0.54 -1.2
1,273,035 + OLJFJH_06280 0.54 -2.1
1,273,035 + OLJFJH_06280 0.54 -2.9
1,273,035 + OLJFJH_06280 0.54 -4.0
1,273,035 + OLJFJH_06280 0.54 -1.5
1,273,035 + OLJFJH_06280 0.54 -0.9
1,273,035 + OLJFJH_06280 0.54 -3.1
1,273,036 - OLJFJH_06280 0.54 -0.8
1,273,036 - OLJFJH_06280 0.54 -0.1
1,273,036 - OLJFJH_06280 0.54 -2.9
1,273,036 - OLJFJH_06280 0.54 -1.3
1,273,078 - OLJFJH_06280 0.58 -2.1
1,273,078 - OLJFJH_06280 0.58 -1.4
1,273,110 + OLJFJH_06280 0.61 -2.0
1,273,111 - OLJFJH_06280 0.61 -0.1
1,273,111 - OLJFJH_06280 0.61 -1.7
1,273,113 + OLJFJH_06280 0.61 -2.7
1,273,117 - OLJFJH_06280 0.62 -0.7
1,273,117 - OLJFJH_06280 0.62 -2.2
1,273,207 - OLJFJH_06280 0.70 -1.4
1,273,218 + OLJFJH_06280 0.71 -2.9
1,273,219 - OLJFJH_06280 0.71 -1.8
1,273,219 - OLJFJH_06280 0.71 -1.4
1,273,219 - OLJFJH_06280 0.71 -2.5
1,273,272 + OLJFJH_06280 0.76 -2.0
1,273,273 - OLJFJH_06280 0.76 -4.0
1,273,273 - OLJFJH_06280 0.76 -0.8
1,273,273 - OLJFJH_06280 0.76 -0.7
1,273,273 - OLJFJH_06280 0.76 -3.0
1,273,273 - OLJFJH_06280 0.76 -1.8
1,273,273 - OLJFJH_06280 0.76 -2.9
1,273,303 - OLJFJH_06280 0.78 -1.5
1,273,428 + OLJFJH_06280 0.90 -2.2
1,273,435 + -1.4
1,273,506 + +0.6
1,273,521 + -0.6
1,273,522 - -1.3
1,273,568 + -1.4
1,273,569 - -2.3
1,273,689 + OLJFJH_06285 0.12 -1.3
1,273,689 + OLJFJH_06285 0.12 -1.0
1,273,690 - OLJFJH_06285 0.12 -0.7
1,273,719 - OLJFJH_06285 0.15 -0.7
1,273,811 + OLJFJH_06285 0.24 -1.8
1,273,917 + OLJFJH_06285 0.34 -1.3
1,274,074 + OLJFJH_06285 0.49 -0.3
1,274,082 + OLJFJH_06285 0.50 -1.3
1,274,082 + OLJFJH_06285 0.50 -0.4
1,274,083 - OLJFJH_06285 0.50 -2.8
1,274,083 - OLJFJH_06285 0.50 -1.2
1,274,120 + OLJFJH_06285 0.54 -0.1
1,274,158 + OLJFJH_06285 0.57 -1.6
1,274,158 + OLJFJH_06285 0.57 -0.3
1,274,158 + OLJFJH_06285 0.57 -0.7
1,274,158 + OLJFJH_06285 0.57 -1.1
1,274,158 + OLJFJH_06285 0.57 -0.7
1,274,158 + OLJFJH_06285 0.57 -1.0
1,274,165 - OLJFJH_06285 0.58 -1.3
1,274,208 + OLJFJH_06285 0.62 -1.4
1,274,336 + OLJFJH_06285 0.75 -1.2
1,274,337 - OLJFJH_06285 0.75 -2.7
1,274,341 + OLJFJH_06285 0.75 -1.3
1,274,382 + OLJFJH_06285 0.79 -1.6
1,274,395 - OLJFJH_06285 0.80 -0.9
1,274,395 - OLJFJH_06285 0.80 -1.3
1,274,469 + OLJFJH_06285 0.87 -1.7
1,274,521 + -1.2
1,274,525 + -0.6
1,274,525 + -1.2
1,274,525 + -1.0
1,274,525 + -2.1
1,274,526 - -3.1
1,274,526 - -0.8
1,274,526 - -1.7
1,274,526 - -1.1

Or see this region's nucleotide sequence