Strain Fitness in Erwinia amylovora T8 around OLJFJH_04440

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_04435 and OLJFJH_04440 are separated by 217 nucleotidesOLJFJH_04440 and OLJFJH_04445 are separated by 55 nucleotidesOLJFJH_04445 and OLJFJH_04450 are separated by 46 nucleotides OLJFJH_04435: OLJFJH_04435 - 5-dehydro-2-deoxygluconokinase, at 857,180 to 859,102 _04435 OLJFJH_04440: OLJFJH_04440 - MurR/RpiR family transcriptional regulator, at 859,320 to 860,171 _04440 OLJFJH_04445: OLJFJH_04445 - 5-deoxy-glucuronate isomerase, at 860,227 to 861,060 _04445 OLJFJH_04450: OLJFJH_04450 - methylmalonate-semialdehyde dehydrogenase (CoA acylating), at 861,107 to 862,612 _04450 Position (kb) 859 860 861Strain fitness (log2 ratio) -3 -2 -1 0 1at 858.340 kb on + strand, within OLJFJH_04435at 858.341 kb on - strand, within OLJFJH_04435at 858.436 kb on + strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.600 kb on - strand, within OLJFJH_04435at 858.670 kb on + strand, within OLJFJH_04435at 858.671 kb on - strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.674 kb on - strand, within OLJFJH_04435at 858.674 kb on - strand, within OLJFJH_04435at 858.740 kb on + strand, within OLJFJH_04435at 858.740 kb on + strand, within OLJFJH_04435at 858.741 kb on - strand, within OLJFJH_04435at 858.743 kb on + strand, within OLJFJH_04435at 858.767 kb on + strand, within OLJFJH_04435at 858.768 kb on - strand, within OLJFJH_04435at 858.913 kb on + strandat 858.976 kb on + strandat 858.976 kb on + strandat 858.977 kb on - strandat 858.977 kb on - strandat 859.055 kb on + strandat 859.055 kb on + strandat 859.055 kb on + strandat 859.100 kb on + strandat 859.104 kb on + strandat 859.177 kb on + strandat 859.178 kb on - strandat 859.201 kb on - strandat 859.274 kb on + strandat 859.285 kb on - strandat 859.285 kb on - strandat 859.290 kb on - strandat 859.389 kb on - strandat 859.413 kb on + strand, within OLJFJH_04440at 859.414 kb on - strand, within OLJFJH_04440at 859.415 kb on + strand, within OLJFJH_04440at 859.584 kb on + strand, within OLJFJH_04440at 859.584 kb on + strand, within OLJFJH_04440at 859.585 kb on - strand, within OLJFJH_04440at 859.669 kb on + strand, within OLJFJH_04440at 859.669 kb on + strand, within OLJFJH_04440at 859.670 kb on - strand, within OLJFJH_04440at 859.673 kb on + strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.813 kb on - strand, within OLJFJH_04440at 859.821 kb on + strand, within OLJFJH_04440at 859.822 kb on - strand, within OLJFJH_04440at 859.822 kb on - strand, within OLJFJH_04440at 859.895 kb on + strand, within OLJFJH_04440at 859.932 kb on + strand, within OLJFJH_04440at 859.999 kb on + strand, within OLJFJH_04440at 860.000 kb on - strand, within OLJFJH_04440at 860.202 kb on - strandat 860.228 kb on + strandat 860.336 kb on + strand, within OLJFJH_04445at 860.337 kb on - strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.339 kb on + strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.340 kb on - strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.343 kb on + strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.344 kb on - strand, within OLJFJH_04445at 860.386 kb on + strand, within OLJFJH_04445at 860.448 kb on - strand, within OLJFJH_04445at 860.492 kb on + strand, within OLJFJH_04445at 860.493 kb on - strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.495 kb on + strand, within OLJFJH_04445at 860.496 kb on - strand, within OLJFJH_04445at 860.496 kb on - strand, within OLJFJH_04445at 860.544 kb on + strand, within OLJFJH_04445at 860.544 kb on + strand, within OLJFJH_04445at 860.580 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.582 kb on + strand, within OLJFJH_04445at 860.583 kb on - strand, within OLJFJH_04445at 860.583 kb on - strand, within OLJFJH_04445at 860.711 kb on - strand, within OLJFJH_04445at 860.848 kb on - strand, within OLJFJH_04445at 860.860 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.960 kb on + strand, within OLJFJH_04445at 860.979 kb on - strandat 861.004 kb on - strandat 861.004 kb on - strandat 861.004 kb on - strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.006 kb on + strandat 861.007 kb on - strandat 861.007 kb on - strandat 861.007 kb on - strandat 861.047 kb on + strandat 861.047 kb on + strandat 861.048 kb on - strandat 861.048 kb on - strandat 861.052 kb on + strandat 861.088 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
remove
858,340 + OLJFJH_04435 0.60 -1.7
858,341 - OLJFJH_04435 0.60 -0.3
858,436 + OLJFJH_04435 0.65 -0.3
858,437 - OLJFJH_04435 0.65 -0.4
858,437 - OLJFJH_04435 0.65 +0.4
858,437 - OLJFJH_04435 0.65 -0.3
858,437 - OLJFJH_04435 0.65 +0.2
858,600 - OLJFJH_04435 0.74 -1.1
858,670 + OLJFJH_04435 0.77 +0.3
858,671 - OLJFJH_04435 0.78 +0.1
858,673 + OLJFJH_04435 0.78 -0.8
858,673 + OLJFJH_04435 0.78 +0.1
858,673 + OLJFJH_04435 0.78 -0.3
858,674 - OLJFJH_04435 0.78 -0.7
858,674 - OLJFJH_04435 0.78 +0.6
858,740 + OLJFJH_04435 0.81 +0.5
858,740 + OLJFJH_04435 0.81 +0.7
858,741 - OLJFJH_04435 0.81 +0.1
858,743 + OLJFJH_04435 0.81 -2.3
858,767 + OLJFJH_04435 0.83 +1.7
858,768 - OLJFJH_04435 0.83 -0.2
858,913 + -2.0
858,976 + +0.2
858,976 + +0.7
858,977 - +0.1
858,977 - +0.1
859,055 + +0.5
859,055 + -0.7
859,055 + +0.8
859,100 + +0.5
859,104 + -0.0
859,177 + +0.1
859,178 - -0.1
859,201 - -0.4
859,274 + +1.6
859,285 - -2.5
859,285 - -0.7
859,290 - -2.4
859,389 - -0.8
859,413 + OLJFJH_04440 0.11 -1.1
859,414 - OLJFJH_04440 0.11 +0.8
859,415 + OLJFJH_04440 0.11 -0.2
859,584 + OLJFJH_04440 0.31 -2.0
859,584 + OLJFJH_04440 0.31 -2.3
859,585 - OLJFJH_04440 0.31 -2.0
859,669 + OLJFJH_04440 0.41 -2.2
859,669 + OLJFJH_04440 0.41 -1.9
859,670 - OLJFJH_04440 0.41 -1.3
859,673 + OLJFJH_04440 0.41 -1.4
859,674 - OLJFJH_04440 0.42 -1.0
859,674 - OLJFJH_04440 0.42 -0.9
859,674 - OLJFJH_04440 0.42 -2.8
859,773 + OLJFJH_04440 0.53 -2.2
859,773 + OLJFJH_04440 0.53 -1.4
859,773 + OLJFJH_04440 0.53 -3.5
859,773 + OLJFJH_04440 0.53 -2.4
859,773 + OLJFJH_04440 0.53 -3.1
859,773 + OLJFJH_04440 0.53 -3.0
859,774 - OLJFJH_04440 0.53 -2.1
859,774 - OLJFJH_04440 0.53 -1.9
859,774 - OLJFJH_04440 0.53 -1.2
859,813 - OLJFJH_04440 0.58 -2.0
859,821 + OLJFJH_04440 0.59 +1.1
859,822 - OLJFJH_04440 0.59 -1.8
859,822 - OLJFJH_04440 0.59 -2.3
859,895 + OLJFJH_04440 0.67 -1.2
859,932 + OLJFJH_04440 0.72 -1.5
859,999 + OLJFJH_04440 0.80 -0.1
860,000 - OLJFJH_04440 0.80 -2.0
860,202 - +0.2
860,228 + -0.8
860,336 + OLJFJH_04445 0.13 -0.1
860,337 - OLJFJH_04445 0.13 -0.1
860,339 + OLJFJH_04445 0.13 +0.7
860,339 + OLJFJH_04445 0.13 +0.7
860,339 + OLJFJH_04445 0.13 +0.3
860,339 + OLJFJH_04445 0.13 -0.0
860,339 + OLJFJH_04445 0.13 +0.5
860,339 + OLJFJH_04445 0.13 +0.1
860,339 + OLJFJH_04445 0.13 +0.3
860,339 + OLJFJH_04445 0.13 +0.2
860,339 + OLJFJH_04445 0.13 +0.8
860,340 - OLJFJH_04445 0.14 +1.0
860,340 - OLJFJH_04445 0.14 -1.2
860,340 - OLJFJH_04445 0.14 +0.2
860,343 + OLJFJH_04445 0.14 +0.2
860,343 + OLJFJH_04445 0.14 -1.2
860,343 + OLJFJH_04445 0.14 -0.4
860,343 + OLJFJH_04445 0.14 +1.4
860,344 - OLJFJH_04445 0.14 -1.4
860,344 - OLJFJH_04445 0.14 +0.1
860,344 - OLJFJH_04445 0.14 -1.3
860,344 - OLJFJH_04445 0.14 +0.5
860,386 + OLJFJH_04445 0.19 -0.6
860,448 - OLJFJH_04445 0.26 -0.5
860,492 + OLJFJH_04445 0.32 -0.8
860,493 - OLJFJH_04445 0.32 +0.0
860,495 + OLJFJH_04445 0.32 -0.0
860,495 + OLJFJH_04445 0.32 -0.2
860,495 + OLJFJH_04445 0.32 -0.1
860,495 + OLJFJH_04445 0.32 -1.0
860,495 + OLJFJH_04445 0.32 +0.9
860,496 - OLJFJH_04445 0.32 -0.0
860,496 - OLJFJH_04445 0.32 -0.1
860,544 + OLJFJH_04445 0.38 -1.9
860,544 + OLJFJH_04445 0.38 -0.3
860,580 + OLJFJH_04445 0.42 +0.5
860,582 + OLJFJH_04445 0.43 -0.6
860,582 + OLJFJH_04445 0.43 -0.6
860,582 + OLJFJH_04445 0.43 +0.4
860,582 + OLJFJH_04445 0.43 -0.0
860,583 - OLJFJH_04445 0.43 +0.0
860,583 - OLJFJH_04445 0.43 -0.3
860,711 - OLJFJH_04445 0.58 +0.3
860,848 - OLJFJH_04445 0.74 -0.6
860,860 + OLJFJH_04445 0.76 -0.9
860,960 + OLJFJH_04445 0.88 -0.0
860,960 + OLJFJH_04445 0.88 -0.1
860,960 + OLJFJH_04445 0.88 -1.1
860,979 - -0.3
861,004 - +0.1
861,004 - -0.8
861,004 - +0.1
861,006 + -0.3
861,006 + -0.4
861,006 + -0.2
861,006 + -0.4
861,007 - -0.1
861,007 - -0.5
861,007 - -0.0
861,047 + -0.1
861,047 + +0.3
861,048 - +0.0
861,048 - -0.2
861,052 + +0.4
861,088 - -0.1

Or see this region's nucleotide sequence