Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25725

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,485	+		LU632_RS25710	0.82	+0.5
1,573	+				-1.7
1,633	+				+2.6
1,633	+				+1.3
1,633	+				+0.6
1,633	+				-0.3
1,633	+				-3.9
1,633	+				-1.3
1,633	+				-0.2
1,729	-				-1.5
1,751	+				-1.0
1,814	+		LU632_RS25715	0.17	-1.1
1,815	-		LU632_RS25715	0.18	-1.1
1,982	+		LU632_RS25715	0.83	-0.3
1,982	+		LU632_RS25715	0.83	-0.7
1,982	+		LU632_RS25715	0.83	-0.7
1,983	-		LU632_RS25715	0.84	-1.7
1,985	-		LU632_RS25715	0.84	-2.1
2,072	+				-0.1
2,072	+				+0.9
2,073	-				+0.7
2,085	+				-1.0
2,086	-				-0.4
2,700	-		LU632_RS25725	0.34	-1.6
2,705	+		LU632_RS25725	0.34	-1.5
2,840	-		LU632_RS25725	0.54	-0.7
2,961	-		LU632_RS25725	0.72	-2.5
2,961	-		LU632_RS25725	0.72	-0.1
3,173	-				-0.0
3,173	-				-1.1
3,270	-				-0.0
3,276	+				-0.4
3,295	+				-1.4
3,295	+				-0.2
3,295	+				-3.0
3,296	-				+0.6
3,306	+				-2.1
3,306	+				+2.2
3,306	+				+1.0
3,306	+				-0.6
3,306	+				+0.3
3,306	+				-1.0
3,307	-				+0.8
3,310	+				-1.7
3,310	+				-0.3
3,311	-				+0.1
3,315	+				-1.3
3,337	+				+2.0
3,359	+				+0.4
3,363	+				-1.1
3,363	+				+0.9
3,386	+				-0.4
3,386	+				+0.2
3,386	+				-0.1
3,386	+				+0.7
3,387	-				-0.3
3,387	-				-0.5
3,387	-				-0.9
3,387	-				-0.0
3,387	-				+0.0
3,387	-				+0.9
3,388	+				-0.1
3,388	+				-2.0
3,388	+				+0.6
3,389	-				-1.7
3,389	-				-0.8
3,389	-				+0.1
3,389	-				-0.1
3,389	-				+1.5
3,394	+				+2.9
3,394	+				-0.6
3,395	-				+0.1
3,398	+				+0.9
3,399	-				+2.5
3,530	+		LU632_RS25730	0.13	+1.0
3,703	+		LU632_RS25730	0.30	-0.7
3,703	+		LU632_RS25730	0.30	-1.7
3,725	+		LU632_RS25730	0.33	+0.8
3,725	+		LU632_RS25730	0.33	+0.6
3,725	+		LU632_RS25730	0.33	-0.7
3,725	+		LU632_RS25730	0.33	+0.4
3,726	-		LU632_RS25730	0.33	+2.4
3,726	-		LU632_RS25730	0.33	-0.7
3,726	-		LU632_RS25730	0.33	+2.7
3,726	-		LU632_RS25730	0.33	+0.6
3,726	-		LU632_RS25730	0.33	+0.2
3,749	-		LU632_RS25730	0.35	-1.3
3,772	-		LU632_RS25730	0.38	-2.1
4,121	+		LU632_RS25730	0.73	-2.5
4,122	-		LU632_RS25730	0.73	-0.3