Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25585

Experiment: plant=Melon; plant sample=M5; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25575 and LU632_RS25580 are separated by 155 nucleotidesLU632_RS25580 and LU632_RS25585 are separated by 38 nucleotidesLU632_RS25585 and LU632_RS25590 are separated by 66 nucleotides LU632_RS25575: LU632_RS25575 - hypothetical protein, at 43,178 to 44,383 _RS25575 LU632_RS25580: LU632_RS25580 - site-specific integrase, at 44,539 to 45,324 _RS25580 LU632_RS25585: LU632_RS25585 - hypothetical protein, at 45,363 to 45,974 _RS25585 LU632_RS25590: LU632_RS25590 - DUF3426 domain-containing protein, at 46,041 to 46,349 _RS25590 Position (kb) 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 44.445 kb on - strandat 44.528 kb on + strandat 44.529 kb on - strandat 44.540 kb on + strandat 44.541 kb on - strandat 44.541 kb on - strandat 44.541 kb on - strandat 44.548 kb on - strandat 44.548 kb on - strandat 44.642 kb on - strand, within LU632_RS25580at 44.649 kb on + strand, within LU632_RS25580at 44.650 kb on - strand, within LU632_RS25580at 44.650 kb on - strand, within LU632_RS25580at 44.651 kb on + strand, within LU632_RS25580at 44.651 kb on + strand, within LU632_RS25580at 44.652 kb on - strand, within LU632_RS25580at 44.652 kb on - strand, within LU632_RS25580at 44.721 kb on - strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.727 kb on + strand, within LU632_RS25580at 44.728 kb on - strand, within LU632_RS25580at 44.728 kb on - strand, within LU632_RS25580at 44.728 kb on - strand, within LU632_RS25580at 44.728 kb on - strand, within LU632_RS25580at 44.728 kb on - strand, within LU632_RS25580at 44.728 kb on - strand, within LU632_RS25580at 44.738 kb on + strand, within LU632_RS25580at 44.739 kb on - strand, within LU632_RS25580at 44.754 kb on + strand, within LU632_RS25580at 44.755 kb on - strand, within LU632_RS25580at 44.845 kb on + strand, within LU632_RS25580at 44.892 kb on + strand, within LU632_RS25580at 45.028 kb on - strand, within LU632_RS25580at 45.028 kb on - strand, within LU632_RS25580at 45.146 kb on - strand, within LU632_RS25580at 45.169 kb on + strand, within LU632_RS25580at 45.170 kb on - strand, within LU632_RS25580at 45.170 kb on - strand, within LU632_RS25580at 45.173 kb on + strand, within LU632_RS25580at 45.174 kb on - strand, within LU632_RS25580at 45.209 kb on + strand, within LU632_RS25580at 45.324 kb on + strandat 45.324 kb on + strandat 45.324 kb on + strandat 45.324 kb on + strandat 45.325 kb on - strandat 45.325 kb on - strandat 45.341 kb on - strandat 45.382 kb on + strandat 45.415 kb on + strandat 45.429 kb on - strand, within LU632_RS25585at 45.488 kb on + strand, within LU632_RS25585at 45.491 kb on + strand, within LU632_RS25585at 45.491 kb on + strand, within LU632_RS25585at 45.492 kb on - strand, within LU632_RS25585at 45.492 kb on - strand, within LU632_RS25585at 45.493 kb on + strand, within LU632_RS25585at 45.493 kb on + strand, within LU632_RS25585at 45.494 kb on - strand, within LU632_RS25585at 45.623 kb on + strand, within LU632_RS25585at 45.624 kb on - strand, within LU632_RS25585at 45.794 kb on - strand, within LU632_RS25585at 45.897 kb on - strand, within LU632_RS25585at 45.897 kb on - strand, within LU632_RS25585at 45.897 kb on - strand, within LU632_RS25585at 45.898 kb on + strand, within LU632_RS25585at 45.898 kb on + strand, within LU632_RS25585at 45.898 kb on + strand, within LU632_RS25585at 45.898 kb on + strand, within LU632_RS25585at 45.898 kb on + strand, within LU632_RS25585at 45.898 kb on + strand, within LU632_RS25585at 45.899 kb on - strand, within LU632_RS25585at 45.899 kb on - strand, within LU632_RS25585at 45.899 kb on - strand, within LU632_RS25585at 45.899 kb on - strand, within LU632_RS25585at 45.899 kb on - strand, within LU632_RS25585at 45.899 kb on - strand, within LU632_RS25585at 45.899 kb on - strand, within LU632_RS25585at 45.995 kb on - strandat 46.001 kb on + strandat 46.039 kb on + strandat 46.096 kb on + strand, within LU632_RS25590at 46.096 kb on + strand, within LU632_RS25590at 46.096 kb on + strand, within LU632_RS25590at 46.097 kb on - strand, within LU632_RS25590at 46.097 kb on - strand, within LU632_RS25590at 46.124 kb on + strand, within LU632_RS25590at 46.124 kb on + strand, within LU632_RS25590at 46.125 kb on - strand, within LU632_RS25590at 46.125 kb on - strand, within LU632_RS25590at 46.127 kb on + strand, within LU632_RS25590at 46.170 kb on + strand, within LU632_RS25590at 46.207 kb on - strand, within LU632_RS25590at 46.208 kb on + strand, within LU632_RS25590at 46.208 kb on + strand, within LU632_RS25590at 46.208 kb on + strand, within LU632_RS25590at 46.208 kb on + strand, within LU632_RS25590at 46.208 kb on + strand, within LU632_RS25590at 46.208 kb on + strand, within LU632_RS25590at 46.208 kb on + strand, within LU632_RS25590at 46.209 kb on - strand, within LU632_RS25590at 46.209 kb on - strand, within LU632_RS25590at 46.209 kb on - strand, within LU632_RS25590at 46.220 kb on - strand, within LU632_RS25590at 46.251 kb on + strand, within LU632_RS25590at 46.316 kb on + strand, within LU632_RS25590at 46.317 kb on - strand, within LU632_RS25590at 46.317 kb on - strand, within LU632_RS25590at 46.317 kb on - strand, within LU632_RS25590at 46.321 kb on - strandat 46.329 kb on + strandat 46.329 kb on + strandat 46.330 kb on - strandat 46.355 kb on - strandat 46.550 kb on - strandat 46.637 kb on + strandat 46.637 kb on + strandat 46.638 kb on - strandat 46.638 kb on - strandat 46.665 kb on + strandat 46.665 kb on + strandat 46.668 kb on - strandat 46.668 kb on - strandat 46.668 kb on - strandat 46.671 kb on + strandat 46.672 kb on - strandat 46.677 kb on + strandat 46.741 kb on - strandat 46.780 kb on + strandat 46.780 kb on + strandat 46.780 kb on + strandat 46.781 kb on - strandat 46.781 kb on - strandat 46.781 kb on - strandat 46.781 kb on - strandat 46.925 kb on - strandat 46.925 kb on - strandat 46.943 kb on + strandat 46.943 kb on + strandat 46.944 kb on - strandat 46.947 kb on + strandat 46.947 kb on + strandat 46.948 kb on - strandat 46.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2
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44,445 - +0.6
44,528 + -0.7
44,529 - -0.4
44,540 + +2.1
44,541 - +1.2
44,541 - -1.6
44,541 - -0.0
44,548 - -1.6
44,548 - -0.3
44,642 - LU632_RS25580 0.13 -2.3
44,649 + LU632_RS25580 0.14 +1.1
44,650 - LU632_RS25580 0.14 -0.2
44,650 - LU632_RS25580 0.14 +1.1
44,651 + LU632_RS25580 0.14 -2.3
44,651 + LU632_RS25580 0.14 +0.9
44,652 - LU632_RS25580 0.14 +1.7
44,652 - LU632_RS25580 0.14 -1.4
44,721 - LU632_RS25580 0.23 -0.4
44,727 + LU632_RS25580 0.24 -1.9
44,727 + LU632_RS25580 0.24 +0.1
44,727 + LU632_RS25580 0.24 +0.5
44,727 + LU632_RS25580 0.24 -0.7
44,727 + LU632_RS25580 0.24 -1.1
44,727 + LU632_RS25580 0.24 +1.1
44,727 + LU632_RS25580 0.24 -1.9
44,727 + LU632_RS25580 0.24 +0.1
44,727 + LU632_RS25580 0.24 +0.1
44,728 - LU632_RS25580 0.24 -0.7
44,728 - LU632_RS25580 0.24 +1.1
44,728 - LU632_RS25580 0.24 -0.4
44,728 - LU632_RS25580 0.24 +0.8
44,728 - LU632_RS25580 0.24 +0.8
44,728 - LU632_RS25580 0.24 +2.5
44,738 + LU632_RS25580 0.25 +1.1
44,739 - LU632_RS25580 0.25 -0.4
44,754 + LU632_RS25580 0.27 -0.4
44,755 - LU632_RS25580 0.27 -0.9
44,845 + LU632_RS25580 0.39 +1.0
44,892 + LU632_RS25580 0.45 -1.2
45,028 - LU632_RS25580 0.62 -2.2
45,028 - LU632_RS25580 0.62 +0.4
45,146 - LU632_RS25580 0.77 +0.1
45,169 + LU632_RS25580 0.80 -0.7
45,170 - LU632_RS25580 0.80 +1.1
45,170 - LU632_RS25580 0.80 -2.8
45,173 + LU632_RS25580 0.81 -0.9
45,174 - LU632_RS25580 0.81 +0.7
45,209 + LU632_RS25580 0.85 -1.2
45,324 + -1.0
45,324 + +0.2
45,324 + +1.1
45,324 + -1.4
45,325 - +0.4
45,325 - -0.8
45,341 - -2.3
45,382 + +2.8
45,415 + -2.2
45,429 - LU632_RS25585 0.11 +0.8
45,488 + LU632_RS25585 0.20 +1.6
45,491 + LU632_RS25585 0.21 -1.7
45,491 + LU632_RS25585 0.21 -0.2
45,492 - LU632_RS25585 0.21 -0.0
45,492 - LU632_RS25585 0.21 -2.2
45,493 + LU632_RS25585 0.21 +0.2
45,493 + LU632_RS25585 0.21 -2.2
45,494 - LU632_RS25585 0.21 -0.8
45,623 + LU632_RS25585 0.42 +0.4
45,624 - LU632_RS25585 0.43 +0.6
45,794 - LU632_RS25585 0.70 +1.4
45,897 - LU632_RS25585 0.87 -0.3
45,897 - LU632_RS25585 0.87 -0.6
45,897 - LU632_RS25585 0.87 -0.3
45,898 + LU632_RS25585 0.87 +0.5
45,898 + LU632_RS25585 0.87 +0.9
45,898 + LU632_RS25585 0.87 -0.9
45,898 + LU632_RS25585 0.87 -0.9
45,898 + LU632_RS25585 0.87 -0.6
45,898 + LU632_RS25585 0.87 -2.3
45,899 - LU632_RS25585 0.88 +1.1
45,899 - LU632_RS25585 0.88 -1.2
45,899 - LU632_RS25585 0.88 +1.1
45,899 - LU632_RS25585 0.88 +1.1
45,899 - LU632_RS25585 0.88 +0.8
45,899 - LU632_RS25585 0.88 -1.2
45,899 - LU632_RS25585 0.88 -1.2
45,995 - -1.7
46,001 + +1.2
46,039 + -1.7
46,096 + LU632_RS25590 0.18 -0.4
46,096 + LU632_RS25590 0.18 -0.5
46,096 + LU632_RS25590 0.18 -0.6
46,097 - LU632_RS25590 0.18 +1.3
46,097 - LU632_RS25590 0.18 +0.2
46,124 + LU632_RS25590 0.27 -0.4
46,124 + LU632_RS25590 0.27 -2.8
46,125 - LU632_RS25590 0.27 -0.4
46,125 - LU632_RS25590 0.27 +3.6
46,127 + LU632_RS25590 0.28 -0.9
46,170 + LU632_RS25590 0.42 -2.8
46,207 - LU632_RS25590 0.54 -2.3
46,208 + LU632_RS25590 0.54 +2.1
46,208 + LU632_RS25590 0.54 +1.5
46,208 + LU632_RS25590 0.54 +2.1
46,208 + LU632_RS25590 0.54 -0.9
46,208 + LU632_RS25590 0.54 -1.0
46,208 + LU632_RS25590 0.54 -2.0
46,208 + LU632_RS25590 0.54 -0.0
46,209 - LU632_RS25590 0.54 -2.2
46,209 - LU632_RS25590 0.54 +0.3
46,209 - LU632_RS25590 0.54 -2.3
46,220 - LU632_RS25590 0.58 -0.4
46,251 + LU632_RS25590 0.68 +0.0
46,316 + LU632_RS25590 0.89 +1.5
46,317 - LU632_RS25590 0.89 -0.0
46,317 - LU632_RS25590 0.89 -0.4
46,317 - LU632_RS25590 0.89 -0.6
46,321 - -1.2
46,329 + +0.4
46,329 + -0.6
46,330 - +1.5
46,355 - +0.8
46,550 - -0.9
46,637 + -1.3
46,637 + -1.7
46,638 - +1.3
46,638 - -1.7
46,665 + +0.1
46,665 + +2.3
46,668 - -0.9
46,668 - +1.6
46,668 - +1.9
46,671 + +0.2
46,672 - -0.4
46,677 + -0.7
46,741 - +0.1
46,780 + -0.7
46,780 + -0.7
46,780 + -1.2
46,781 - +1.5
46,781 - +0.4
46,781 - -1.8
46,781 - +2.9
46,925 - +1.9
46,925 - -0.4
46,943 + -1.0
46,943 + +1.1
46,944 - -0.4
46,947 + -0.4
46,947 + +0.0
46,948 - -2.9
46,948 - +0.0

Or see this region's nucleotide sequence