Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gspF and gspG are separated by 22 nucleotides gspG and gspI are separated by 1 nucleotides gspI and gspJ overlap by 4 nucleotides gspJ and LU632_RS25260 overlap by 1 nucleotides
LU632_RS25240: gspF - type II secretion system inner membrane protein GspF, at 4,802,146 to 4,803,345
gspF
LU632_RS25245: gspG - type II secretion system major pseudopilin GspG, at 4,803,368 to 4,803,811
gspG
LU632_RS25250: gspI - type II secretion system minor pseudopilin GspI, at 4,803,813 to 4,804,208
gspI
LU632_RS25255: gspJ - type II secretion system minor pseudopilin GspJ, at 4,804,205 to 4,804,756
gspJ
LU632_RS25260: LU632_RS25260 - type II secretion system protein GspK, at 4,804,756 to 4,805,655
_RS25260
Position (kb) 4803
4804
4805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4802.935 kb on - strand, within gspF at 4802.935 kb on - strand, within gspF at 4803.034 kb on + strand, within gspF at 4803.035 kb on - strand, within gspF at 4803.035 kb on - strand, within gspF at 4803.035 kb on - strand, within gspF at 4803.072 kb on - strand, within gspF at 4803.072 kb on - strand, within gspF at 4803.073 kb on + strand, within gspF at 4803.073 kb on + strand, within gspF at 4803.331 kb on - strand at 4803.333 kb on + strand at 4803.333 kb on + strand at 4803.333 kb on + strand at 4803.333 kb on + strand at 4803.333 kb on + strand at 4803.338 kb on + strand at 4803.351 kb on + strand at 4803.351 kb on + strand at 4803.360 kb on + strand at 4803.361 kb on - strand at 4803.368 kb on - strand at 4803.429 kb on + strand, within gspG at 4803.443 kb on - strand, within gspG at 4803.466 kb on + strand, within gspG at 4803.529 kb on + strand, within gspG at 4803.530 kb on - strand, within gspG at 4803.530 kb on - strand, within gspG at 4803.554 kb on + strand, within gspG at 4803.554 kb on + strand, within gspG at 4803.554 kb on + strand, within gspG at 4803.555 kb on - strand, within gspG at 4803.644 kb on + strand, within gspG at 4803.659 kb on + strand, within gspG at 4803.659 kb on + strand, within gspG at 4803.659 kb on + strand, within gspG at 4803.661 kb on + strand, within gspG at 4803.948 kb on - strand, within gspI at 4803.953 kb on + strand, within gspI at 4803.955 kb on + strand, within gspI at 4803.956 kb on - strand, within gspI at 4803.956 kb on - strand, within gspI at 4803.965 kb on + strand, within gspI at 4804.258 kb on + strand at 4804.287 kb on - strand, within gspJ at 4804.501 kb on - strand, within gspJ at 4804.523 kb on + strand, within gspJ at 4804.614 kb on + strand, within gspJ at 4804.615 kb on - strand, within gspJ at 4804.662 kb on + strand, within gspJ at 4804.981 kb on - strand, within LU632_RS25260 at 4805.130 kb on + strand, within LU632_RS25260 at 4805.131 kb on - strand, within LU632_RS25260 at 4805.131 kb on - strand, within LU632_RS25260 at 4805.131 kb on - strand, within LU632_RS25260 at 4805.132 kb on + strand, within LU632_RS25260 at 4805.132 kb on + strand, within LU632_RS25260 at 4805.132 kb on + strand, within LU632_RS25260 at 4805.132 kb on + strand, within LU632_RS25260 at 4805.132 kb on + strand, within LU632_RS25260 at 4805.132 kb on + strand, within LU632_RS25260 at 4805.132 kb on + strand, within LU632_RS25260 at 4805.133 kb on - strand, within LU632_RS25260 at 4805.133 kb on - strand, within LU632_RS25260
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 4,802,935 - gspF LU632_RS25240 0.66 +1.7 4,802,935 - gspF LU632_RS25240 0.66 -1.3 4,803,034 + gspF LU632_RS25240 0.74 -2.2 4,803,035 - gspF LU632_RS25240 0.74 -0.5 4,803,035 - gspF LU632_RS25240 0.74 -0.2 4,803,035 - gspF LU632_RS25240 0.74 -0.8 4,803,072 - gspF LU632_RS25240 0.77 +0.2 4,803,072 - gspF LU632_RS25240 0.77 -0.0 4,803,073 + gspF LU632_RS25240 0.77 -0.6 4,803,073 + gspF LU632_RS25240 0.77 +0.9 4,803,331 - +1.2 4,803,333 + +0.4 4,803,333 + -0.5 4,803,333 + -0.4 4,803,333 + +0.2 4,803,333 + +1.1 4,803,338 + +0.5 4,803,351 + -1.0 4,803,351 + +1.4 4,803,360 + +0.0 4,803,361 - -0.8 4,803,368 - -0.3 4,803,429 + gspG LU632_RS25245 0.14 -0.0 4,803,443 - gspG LU632_RS25245 0.17 -1.0 4,803,466 + gspG LU632_RS25245 0.22 -0.1 4,803,529 + gspG LU632_RS25245 0.36 -0.9 4,803,530 - gspG LU632_RS25245 0.36 -0.5 4,803,530 - gspG LU632_RS25245 0.36 -0.6 4,803,554 + gspG LU632_RS25245 0.42 +2.1 4,803,554 + gspG LU632_RS25245 0.42 -0.3 4,803,554 + gspG LU632_RS25245 0.42 +0.6 4,803,555 - gspG LU632_RS25245 0.42 -0.0 4,803,644 + gspG LU632_RS25245 0.62 -1.9 4,803,659 + gspG LU632_RS25245 0.66 -2.9 4,803,659 + gspG LU632_RS25245 0.66 -0.5 4,803,659 + gspG LU632_RS25245 0.66 -0.7 4,803,661 + gspG LU632_RS25245 0.66 +1.1 4,803,948 - gspI LU632_RS25250 0.34 -0.5 4,803,953 + gspI LU632_RS25250 0.35 -1.1 4,803,955 + gspI LU632_RS25250 0.36 -1.0 4,803,956 - gspI LU632_RS25250 0.36 -2.8 4,803,956 - gspI LU632_RS25250 0.36 +1.1 4,803,965 + gspI LU632_RS25250 0.38 -0.9 4,804,258 + -0.2 4,804,287 - gspJ LU632_RS25255 0.15 +0.8 4,804,501 - gspJ LU632_RS25255 0.54 +0.9 4,804,523 + gspJ LU632_RS25255 0.58 -1.0 4,804,614 + gspJ LU632_RS25255 0.74 -0.6 4,804,615 - gspJ LU632_RS25255 0.74 -0.4 4,804,662 + gspJ LU632_RS25255 0.83 +0.8 4,804,981 - LU632_RS25260 0.25 +2.3 4,805,130 + LU632_RS25260 0.42 -0.2 4,805,131 - LU632_RS25260 0.42 +0.0 4,805,131 - LU632_RS25260 0.42 +0.2 4,805,131 - LU632_RS25260 0.42 -2.0 4,805,132 + LU632_RS25260 0.42 -2.2 4,805,132 + LU632_RS25260 0.42 -1.0 4,805,132 + LU632_RS25260 0.42 +0.8 4,805,132 + LU632_RS25260 0.42 +1.7 4,805,132 + LU632_RS25260 0.42 -1.5 4,805,132 + LU632_RS25260 0.42 +1.1 4,805,132 + LU632_RS25260 0.42 -1.7 4,805,133 - LU632_RS25260 0.42 -1.3 4,805,133 - LU632_RS25260 0.42 +0.1
Or see this region's nucleotide sequence