Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24885

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,746,967	+	pstS	LU632_RS24880	0.16	-1.6
4,746,968	-	pstS	LU632_RS24880	0.17	-0.2
4,747,122	+	pstS	LU632_RS24880	0.31	-0.5
4,747,180	+	pstS	LU632_RS24880	0.37	-1.0
4,747,257	+	pstS	LU632_RS24880	0.44	+0.8
4,747,312	+	pstS	LU632_RS24880	0.50	+1.8
4,747,476	+	pstS	LU632_RS24880	0.65	+0.4
4,747,626	+	pstS	LU632_RS24880	0.80	-1.5
4,747,627	-	pstS	LU632_RS24880	0.80	-1.0
4,747,711	+	pstS	LU632_RS24880	0.88	-1.6
4,747,711	+	pstS	LU632_RS24880	0.88	-1.0
4,747,713	+	pstS	LU632_RS24880	0.88	-1.6
4,747,713	+	pstS	LU632_RS24880	0.88	-0.8
4,747,714	-	pstS	LU632_RS24880	0.88	-0.5
4,747,805	+				+0.6
4,747,805	+				+1.4
4,747,805	+				+4.1
4,747,834	+				-1.3
4,747,834	+				-0.3
4,747,835	-				-0.2
4,748,152	+	pstC	LU632_RS24885	0.24	-0.8
4,748,153	-	pstC	LU632_RS24885	0.24	+0.0
4,748,204	-	pstC	LU632_RS24885	0.30	-1.6
4,748,302	+	pstC	LU632_RS24885	0.40	-0.5
4,748,343	-	pstC	LU632_RS24885	0.44	-1.3
4,748,377	+	pstC	LU632_RS24885	0.48	-1.3
4,748,378	-	pstC	LU632_RS24885	0.48	-1.2
4,748,659	+	pstC	LU632_RS24885	0.77	-0.5
4,748,659	+	pstC	LU632_RS24885	0.77	+0.8
4,748,663	-	pstC	LU632_RS24885	0.77	-0.5
4,748,720	-	pstC	LU632_RS24885	0.83	-1.0
4,748,794	+				-2.3
4,748,929	-				+1.8
4,748,952	+				-2.7
4,749,035	+	pstA	LU632_RS24890	0.18	-0.5
4,749,276	+	pstA	LU632_RS24890	0.45	+0.2
4,749,276	+	pstA	LU632_RS24890	0.45	-1.8
4,749,277	-	pstA	LU632_RS24890	0.45	-0.8
4,749,298	+	pstA	LU632_RS24890	0.47	+1.8
4,749,440	-	pstA	LU632_RS24890	0.63	+0.2
4,749,469	-	pstA	LU632_RS24890	0.67	-1.9
4,749,469	-	pstA	LU632_RS24890	0.67	+1.8
4,749,726	+				+3.8
4,749,727	-				-2.9
4,749,763	+				+1.8
4,749,773	-				-1.5
4,749,791	-				-0.8