Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24840

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,733,682	+	ravA	LU632_RS24835	0.51	-0.8
4,733,684	+	ravA	LU632_RS24835	0.51	-0.7
4,733,789	+	ravA	LU632_RS24835	0.58	-3.1
4,733,805	+	ravA	LU632_RS24835	0.59	+0.0
4,734,027	+	ravA	LU632_RS24835	0.74	-0.2
4,734,027	+	ravA	LU632_RS24835	0.74	+1.0
4,734,028	-	ravA	LU632_RS24835	0.74	+0.4
4,734,031	-	ravA	LU632_RS24835	0.74	-1.6
4,734,054	+	ravA	LU632_RS24835	0.75	+0.8
4,734,074	-	ravA	LU632_RS24835	0.77	-0.4
4,734,209	+	ravA	LU632_RS24835	0.86	+1.3
4,734,210	-	ravA	LU632_RS24835	0.86	-0.9
4,734,367	+				+1.6
4,734,466	-				-0.2
4,734,492	+				+1.2
4,734,579	+				-1.7
4,734,585	+				+0.2
4,734,585	+				+0.2
4,734,589	+				+2.4
4,734,589	+				-1.4
4,734,590	-				+1.1
4,734,590	-				-1.0
4,734,609	+				-0.2
4,734,609	+				+0.7
4,734,609	+				-0.0
4,734,609	+				+1.0
4,734,676	+				-1.6
4,734,676	+				-1.2
4,734,676	+				-1.1
4,734,681	+				-0.1
4,734,742	+				-2.0
4,734,769	+				-2.4
4,734,769	+				-0.2
4,734,771	+				+0.5
4,734,828	-				-0.5
4,734,883	+	kup	LU632_RS24840	0.11	-1.6
4,734,883	+	kup	LU632_RS24840	0.11	-1.0
4,734,883	+	kup	LU632_RS24840	0.11	-2.4
4,734,884	-	kup	LU632_RS24840	0.11	-1.6
4,734,892	+	kup	LU632_RS24840	0.11	-0.7
4,735,105	+	kup	LU632_RS24840	0.23	-0.7
4,735,107	+	kup	LU632_RS24840	0.23	-1.3
4,735,309	+	kup	LU632_RS24840	0.34	-1.7
4,735,375	+	kup	LU632_RS24840	0.37	-1.7
4,735,375	+	kup	LU632_RS24840	0.37	-1.1
4,735,457	-	kup	LU632_RS24840	0.41	-0.7
4,735,498	-	kup	LU632_RS24840	0.44	-0.2
4,735,666	-	kup	LU632_RS24840	0.53	-1.2
4,735,666	-	kup	LU632_RS24840	0.53	-1.2
4,735,693	+	kup	LU632_RS24840	0.54	-1.2
4,735,704	-	kup	LU632_RS24840	0.55	+0.5
4,735,708	-	kup	LU632_RS24840	0.55	-2.8
4,735,708	-	kup	LU632_RS24840	0.55	-1.7
4,735,828	-	kup	LU632_RS24840	0.61	-2.7
4,736,116	+	kup	LU632_RS24840	0.77	-2.3
4,736,116	+	kup	LU632_RS24840	0.77	-1.0
4,736,116	+	kup	LU632_RS24840	0.77	-2.3
4,736,117	-	kup	LU632_RS24840	0.77	-0.5
4,736,117	-	kup	LU632_RS24840	0.77	+0.3
4,736,118	+	kup	LU632_RS24840	0.77	+0.6
4,736,118	+	kup	LU632_RS24840	0.77	-1.7
4,736,118	+	kup	LU632_RS24840	0.77	-2.3
4,736,119	-	kup	LU632_RS24840	0.77	-2.0
4,736,119	-	kup	LU632_RS24840	0.77	-0.5
4,736,119	-	kup	LU632_RS24840	0.77	-0.2
4,736,119	-	kup	LU632_RS24840	0.77	-0.7
4,736,119	-	kup	LU632_RS24840	0.77	-1.3
4,736,119	-	kup	LU632_RS24840	0.77	-0.2
4,736,119	-	kup	LU632_RS24840	0.77	+0.8
4,736,230	+	kup	LU632_RS24840	0.83	+0.3
4,736,230	+	kup	LU632_RS24840	0.83	-3.9
4,736,230	+	kup	LU632_RS24840	0.83	-1.0
4,736,231	-	kup	LU632_RS24840	0.83	+0.3
4,736,299	+	kup	LU632_RS24840	0.87	-1.1
4,736,333	+	kup	LU632_RS24840	0.88	+1.0
4,736,334	-	kup	LU632_RS24840	0.88	-1.0
4,736,391	+				-0.0
4,736,432	-				-2.2
4,736,522	+				-0.6
4,736,522	+				-2.7
4,736,783	-				-0.7
4,736,799	-				+1.6
4,736,799	-				-0.3
4,736,802	-				+2.8
4,736,895	-				-0.7
4,736,910	+				+0.8
4,736,911	-				+0.8
4,737,040	-		LU632_RS24845	0.44	-1.5
4,737,275	-		LU632_RS24850	0.19	-2.0
4,737,275	-		LU632_RS24850	0.19	-0.1
4,737,275	-		LU632_RS24850	0.19	-0.9
4,737,275	-		LU632_RS24850	0.19	+1.3
4,737,275	-		LU632_RS24850	0.19	-0.2
4,737,275	-		LU632_RS24850	0.19	-0.1
4,737,391	+		LU632_RS24850	0.39	-0.5
4,737,448	-		LU632_RS24850	0.49	-2.1
4,737,448	-		LU632_RS24850	0.49	-2.6
4,737,453	-		LU632_RS24850	0.50	+0.5
4,737,533	+		LU632_RS24850	0.64	-0.0