Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24795

Experiment: plant=Melon; plant sample=M5; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpH and atpF are separated by 14 nucleotidesatpF and atpE are separated by 94 nucleotidesatpE and atpB are separated by 49 nucleotidesatpB and atpI are separated by 8 nucleotides LU632_RS24785: atpH - F0F1 ATP synthase subunit delta, at 4,722,826 to 4,723,359 atpH LU632_RS24790: atpF - F0F1 ATP synthase subunit B, at 4,723,374 to 4,723,844 atpF LU632_RS24795: atpE - F0F1 ATP synthase subunit C, at 4,723,939 to 4,724,181 atpE LU632_RS24800: atpB - F0F1 ATP synthase subunit A, at 4,724,231 to 4,725,049 atpB LU632_RS24805: atpI - F0F1 ATP synthase subunit I, at 4,725,058 to 4,725,438 atpI Position (kb) 4723 4724 4725Strain fitness (log2 ratio) -2 -1 0 1at 4725.077 kb on - strandat 4725.152 kb on - strand, within atpI

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2
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4,725,077 - -1.8
4,725,152 - atpI LU632_RS24805 0.25 -0.1

Or see this region's nucleotide sequence