Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24460

Experiment: plant=Melon; plant sample=M5; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS24455 and LU632_RS24460 are separated by 218 nucleotidesLU632_RS24460 and LU632_RS24465 are separated by 7 nucleotidesLU632_RS24465 and rrf are separated by 111 nucleotidesrrf and LU632_RS24475 are separated by 206 nucleotides LU632_RS24455: LU632_RS24455 - IS1 family transposase, at 4,665,375 to 4,666,072 _RS24455 LU632_RS24460: LU632_RS24460 - tRNA-Trp, at 4,666,291 to 4,666,366 _RS24460 LU632_RS24465: LU632_RS24465 - tRNA-Asp, at 4,666,374 to 4,666,450 _RS24465 LU632_RS24470: rrf - 5S ribosomal RNA, at 4,666,562 to 4,666,677 rrf LU632_RS24475: LU632_RS24475 - 23S ribosomal RNA, at 4,666,884 to 4,669,786 _RS24475 Position (kb) 4666 4667Strain fitness (log2 ratio) -1 0 1 2at 4665.312 kb on + strandat 4665.312 kb on + strandat 4665.312 kb on + strandat 4665.313 kb on - strandat 4665.313 kb on - strandat 4665.314 kb on + strandat 4666.156 kb on + strandat 4666.178 kb on + strandat 4666.224 kb on + strandat 4666.224 kb on + strandat 4666.225 kb on - strandat 4666.225 kb on - strandat 4666.226 kb on + strandat 4666.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2
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4,665,312 + +0.3
4,665,312 + -0.9
4,665,312 + +0.9
4,665,313 - -0.2
4,665,313 - +2.0
4,665,314 + +1.3
4,666,156 + +1.6
4,666,178 + +0.6
4,666,224 + -1.6
4,666,224 + +1.1
4,666,225 - -1.7
4,666,225 - -0.5
4,666,226 + +0.3
4,666,252 - -0.8

Or see this region's nucleotide sequence