Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24450

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,663,475	+		LU632_RS24440	0.44	-0.3
4,663,570	+		LU632_RS24440	0.68	-0.7
4,663,652	-		LU632_RS24440	0.89	+0.3
4,663,652	-		LU632_RS24440	0.89	+1.8
4,663,652	-		LU632_RS24440	0.89	+3.4
4,663,719	+				+0.1
4,663,727	+				+1.1
4,663,727	+				-0.9
4,663,735	+				+2.1
4,663,779	-				+0.4
4,663,781	+				-0.4
4,663,781	+				-0.1
4,663,781	+				+0.2
4,663,781	+				-0.6
4,663,782	-				+0.4
4,663,784	-				+2.6
4,663,784	-				-0.5
4,663,784	-				+0.3
4,663,793	+				-2.9
4,663,793	+				+0.1
4,663,794	-				+0.7
4,663,794	-				+0.6
4,663,817	-				+0.7
4,663,852	+				-0.1
4,663,853	-				-1.5
4,663,853	-				+1.3
4,663,889	+				-1.5
4,663,889	+				-1.0
4,663,938	-				-0.4
4,664,041	+		LU632_RS24445	0.29	-1.5
4,664,041	+		LU632_RS24445	0.29	-0.7
4,664,094	+		LU632_RS24445	0.44	+0.3
4,664,305	-				+0.1
4,664,316	-				+0.1
4,664,334	+				-1.0
4,664,335	-				-1.0
4,664,478	+				-1.0
4,664,478	+				-0.7
4,664,636	+	hdfR	LU632_RS24450	0.28	+0.5
4,664,709	+	hdfR	LU632_RS24450	0.37	+2.4
4,664,789	-	hdfR	LU632_RS24450	0.47	-1.7
4,664,940	+	hdfR	LU632_RS24450	0.65	-1.3
4,664,940	+	hdfR	LU632_RS24450	0.65	-0.2
4,664,941	-	hdfR	LU632_RS24450	0.65	-0.5
4,664,941	-	hdfR	LU632_RS24450	0.65	-1.0
4,664,942	+	hdfR	LU632_RS24450	0.65	-0.2
4,664,942	+	hdfR	LU632_RS24450	0.65	-0.5
4,664,943	-	hdfR	LU632_RS24450	0.65	-0.2
4,665,017	-	hdfR	LU632_RS24450	0.74	+0.3
4,665,079	+	hdfR	LU632_RS24450	0.82	+0.8
4,665,113	-	hdfR	LU632_RS24450	0.86	-1.2
4,665,153	+				+0.3
4,665,154	-				+0.3
4,665,249	+				+0.7
4,665,249	+				+0.0
4,665,276	+				-1.9
4,665,312	+				+0.3
4,665,312	+				-0.9
4,665,312	+				+0.9
4,665,313	-				-0.2
4,665,313	-				+2.0
4,665,314	+				+1.3
4,666,156	+				+1.6
4,666,178	+				+0.6
4,666,224	+				-1.6
4,666,224	+				+1.1
4,666,225	-				-1.7
4,666,225	-				-0.5
4,666,226	+				+0.3