Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24200 and rffM are separated by 179 nucleotides rffM and wzyE are separated by 30 nucleotides wzyE and LU632_RS24215 overlap by 4 nucleotides
LU632_RS24200: LU632_RS24200 - tRNA-Arg, at 4,615,423 to 4,615,499
_RS24200
LU632_RS24205: rffM - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 4,615,679 to 4,616,419
rffM
LU632_RS24210: wzyE - ECA oligosaccharide polymerase, at 4,616,450 to 4,617,799
wzyE
LU632_RS24215: LU632_RS24215 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 4,617,796 to 4,618,863
_RS24215
Position (kb) 4616
4617
4618 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4615.701 kb on + strand at 4615.711 kb on - strand at 4615.765 kb on - strand, within rffM at 4615.796 kb on + strand, within rffM at 4615.811 kb on + strand, within rffM at 4615.833 kb on + strand, within rffM at 4615.854 kb on + strand, within rffM at 4615.854 kb on + strand, within rffM at 4615.854 kb on + strand, within rffM at 4615.854 kb on + strand, within rffM at 4615.855 kb on - strand, within rffM at 4615.855 kb on - strand, within rffM at 4615.855 kb on - strand, within rffM at 4615.855 kb on - strand, within rffM at 4615.874 kb on + strand, within rffM at 4615.875 kb on - strand, within rffM at 4615.875 kb on - strand, within rffM at 4615.875 kb on - strand, within rffM at 4616.015 kb on - strand, within rffM at 4616.215 kb on - strand, within rffM at 4616.218 kb on + strand, within rffM at 4616.218 kb on + strand, within rffM at 4616.218 kb on + strand, within rffM at 4616.219 kb on - strand, within rffM at 4616.220 kb on + strand, within rffM at 4616.287 kb on + strand, within rffM at 4616.335 kb on - strand, within rffM at 4616.375 kb on - strand at 4616.434 kb on - strand at 4616.615 kb on + strand, within wzyE at 4616.615 kb on + strand, within wzyE at 4616.615 kb on + strand, within wzyE at 4616.618 kb on + strand, within wzyE at 4616.626 kb on + strand, within wzyE at 4616.722 kb on + strand, within wzyE at 4616.847 kb on + strand, within wzyE at 4616.847 kb on + strand, within wzyE at 4616.910 kb on + strand, within wzyE at 4617.145 kb on + strand, within wzyE at 4617.145 kb on + strand, within wzyE at 4617.154 kb on + strand, within wzyE at 4617.184 kb on + strand, within wzyE at 4617.184 kb on + strand, within wzyE at 4617.184 kb on + strand, within wzyE at 4617.369 kb on + strand, within wzyE at 4617.369 kb on + strand, within wzyE at 4617.424 kb on + strand, within wzyE at 4617.424 kb on + strand, within wzyE at 4617.457 kb on + strand, within wzyE at 4617.457 kb on + strand, within wzyE at 4617.544 kb on - strand, within wzyE at 4617.544 kb on - strand, within wzyE at 4617.546 kb on + strand, within wzyE at 4617.547 kb on - strand, within wzyE at 4617.617 kb on - strand, within wzyE at 4617.658 kb on - strand, within wzyE at 4617.794 kb on + strand at 4617.795 kb on - strand at 4617.795 kb on - strand at 4617.947 kb on - strand, within LU632_RS24215 at 4618.103 kb on - strand, within LU632_RS24215 at 4618.103 kb on - strand, within LU632_RS24215 at 4618.160 kb on - strand, within LU632_RS24215 at 4618.191 kb on + strand, within LU632_RS24215 at 4618.191 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.193 kb on + strand, within LU632_RS24215 at 4618.194 kb on - strand, within LU632_RS24215 at 4618.194 kb on - strand, within LU632_RS24215 at 4618.282 kb on - strand, within LU632_RS24215 at 4618.369 kb on - strand, within LU632_RS24215 at 4618.387 kb on + strand, within LU632_RS24215 at 4618.487 kb on - strand, within LU632_RS24215 at 4618.491 kb on - strand, within LU632_RS24215 at 4618.608 kb on + strand, within LU632_RS24215
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 4,615,701 + -1.7 4,615,711 - -1.2 4,615,765 - rffM LU632_RS24205 0.12 -3.8 4,615,796 + rffM LU632_RS24205 0.16 -2.1 4,615,811 + rffM LU632_RS24205 0.18 -1.4 4,615,833 + rffM LU632_RS24205 0.21 -3.4 4,615,854 + rffM LU632_RS24205 0.24 -1.0 4,615,854 + rffM LU632_RS24205 0.24 -1.0 4,615,854 + rffM LU632_RS24205 0.24 -2.4 4,615,854 + rffM LU632_RS24205 0.24 -1.0 4,615,855 - rffM LU632_RS24205 0.24 -0.8 4,615,855 - rffM LU632_RS24205 0.24 +0.6 4,615,855 - rffM LU632_RS24205 0.24 -1.0 4,615,855 - rffM LU632_RS24205 0.24 -1.4 4,615,874 + rffM LU632_RS24205 0.26 -2.1 4,615,875 - rffM LU632_RS24205 0.26 -2.0 4,615,875 - rffM LU632_RS24205 0.26 -2.3 4,615,875 - rffM LU632_RS24205 0.26 -1.5 4,616,015 - rffM LU632_RS24205 0.45 -1.4 4,616,215 - rffM LU632_RS24205 0.72 -2.7 4,616,218 + rffM LU632_RS24205 0.73 -0.9 4,616,218 + rffM LU632_RS24205 0.73 -1.8 4,616,218 + rffM LU632_RS24205 0.73 -1.4 4,616,219 - rffM LU632_RS24205 0.73 +1.8 4,616,220 + rffM LU632_RS24205 0.73 -0.8 4,616,287 + rffM LU632_RS24205 0.82 -0.5 4,616,335 - rffM LU632_RS24205 0.89 -0.7 4,616,375 - -2.4 4,616,434 - -0.4 4,616,615 + wzyE LU632_RS24210 0.12 -1.5 4,616,615 + wzyE LU632_RS24210 0.12 -1.0 4,616,615 + wzyE LU632_RS24210 0.12 +0.3 4,616,618 + wzyE LU632_RS24210 0.12 -2.9 4,616,626 + wzyE LU632_RS24210 0.13 -0.8 4,616,722 + wzyE LU632_RS24210 0.20 -2.1 4,616,847 + wzyE LU632_RS24210 0.29 -1.0 4,616,847 + wzyE LU632_RS24210 0.29 -1.0 4,616,910 + wzyE LU632_RS24210 0.34 -2.1 4,617,145 + wzyE LU632_RS24210 0.51 -1.5 4,617,145 + wzyE LU632_RS24210 0.51 +0.6 4,617,154 + wzyE LU632_RS24210 0.52 -2.1 4,617,184 + wzyE LU632_RS24210 0.54 -2.2 4,617,184 + wzyE LU632_RS24210 0.54 -1.0 4,617,184 + wzyE LU632_RS24210 0.54 -1.9 4,617,369 + wzyE LU632_RS24210 0.68 -2.4 4,617,369 + wzyE LU632_RS24210 0.68 -2.2 4,617,424 + wzyE LU632_RS24210 0.72 -1.6 4,617,424 + wzyE LU632_RS24210 0.72 +0.6 4,617,457 + wzyE LU632_RS24210 0.75 +0.8 4,617,457 + wzyE LU632_RS24210 0.75 -1.0 4,617,544 - wzyE LU632_RS24210 0.81 -1.4 4,617,544 - wzyE LU632_RS24210 0.81 +0.2 4,617,546 + wzyE LU632_RS24210 0.81 -2.4 4,617,547 - wzyE LU632_RS24210 0.81 +1.8 4,617,617 - wzyE LU632_RS24210 0.86 -1.4 4,617,658 - wzyE LU632_RS24210 0.89 -0.7 4,617,794 + -2.0 4,617,795 - -0.2 4,617,795 - -1.4 4,617,947 - LU632_RS24215 0.14 -1.2 4,618,103 - LU632_RS24215 0.29 -1.5 4,618,103 - LU632_RS24215 0.29 -1.2 4,618,160 - LU632_RS24215 0.34 -0.5 4,618,191 + LU632_RS24215 0.37 -1.7 4,618,191 + LU632_RS24215 0.37 -2.1 4,618,193 + LU632_RS24215 0.37 -2.5 4,618,193 + LU632_RS24215 0.37 -1.8 4,618,193 + LU632_RS24215 0.37 -1.3 4,618,194 - LU632_RS24215 0.37 -2.5 4,618,194 - LU632_RS24215 0.37 -2.5 4,618,282 - LU632_RS24215 0.46 -1.6 4,618,369 - LU632_RS24215 0.54 -1.4 4,618,387 + LU632_RS24215 0.55 +1.5 4,618,487 - LU632_RS24215 0.65 -2.5 4,618,491 - LU632_RS24215 0.65 -0.8 4,618,608 + LU632_RS24215 0.76 -1.4
Or see this region's nucleotide sequence