Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23875

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,553,354	-				-2.1
4,553,441	-				-1.4
4,553,455	+				+1.2
4,553,639	-				-1.4
4,553,732	+				-2.8
4,553,732	+				-1.6
4,553,733	-				-0.1
4,553,777	+	dsbA	LU632_RS23875	0.15	-0.6
4,553,777	+	dsbA	LU632_RS23875	0.15	-1.9
4,553,889	-	dsbA	LU632_RS23875	0.33	+1.8
4,554,339	-				+1.6
4,554,350	-				-0.2
4,554,525	-		LU632_RS23880	0.17	+0.2
4,554,527	+		LU632_RS23880	0.17	+0.2
4,554,528	-		LU632_RS23880	0.17	+0.9
4,554,540	+		LU632_RS23880	0.18	-0.6
4,554,540	+		LU632_RS23880	0.18	-2.1
4,554,547	+		LU632_RS23880	0.19	-1.6
4,554,574	+		LU632_RS23880	0.21	+0.8
4,554,574	+		LU632_RS23880	0.21	-1.2
4,554,575	-		LU632_RS23880	0.22	+0.5
4,554,590	+		LU632_RS23880	0.23	-0.2
4,554,599	+		LU632_RS23880	0.24	-1.4
4,554,610	+		LU632_RS23880	0.25	-1.8
4,554,611	-		LU632_RS23880	0.25	-3.6
4,554,611	-		LU632_RS23880	0.25	+3.3
4,554,611	-		LU632_RS23880	0.25	+1.5
4,554,613	+		LU632_RS23880	0.25	-3.6
4,554,614	-		LU632_RS23880	0.25	+2.1
4,554,628	-		LU632_RS23880	0.27	+0.7
4,554,628	-		LU632_RS23880	0.27	+0.5
4,554,767	-		LU632_RS23880	0.41	+0.2
4,554,799	+		LU632_RS23880	0.44	-0.5
4,554,800	-		LU632_RS23880	0.44	+1.3
4,554,813	+		LU632_RS23880	0.46	-0.2
4,554,813	+		LU632_RS23880	0.46	+0.4
4,554,813	+		LU632_RS23880	0.46	+0.4
4,554,814	-		LU632_RS23880	0.46	+1.0
4,554,860	-		LU632_RS23880	0.50	-0.9
4,554,899	+		LU632_RS23880	0.54	+0.1
4,554,900	-		LU632_RS23880	0.54	-0.8
4,554,979	+		LU632_RS23880	0.62	-1.4
4,554,998	+		LU632_RS23880	0.64	+0.6
4,555,003	-		LU632_RS23880	0.65	+0.4
4,555,014	-		LU632_RS23880	0.66	+0.3
4,555,200	-		LU632_RS23880	0.84	-2.3
4,555,245	-		LU632_RS23880	0.89	-0.1