Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23800 and LU632_RS23805 overlap by 4 nucleotides LU632_RS23805 and LU632_RS23810 overlap by 1 nucleotides LU632_RS23810 and LU632_RS23815 are separated by 35 nucleotides LU632_RS23815 and LU632_RS23820 overlap by 11 nucleotides LU632_RS23820 and LU632_RS23825 are separated by 43 nucleotides
LU632_RS23800: LU632_RS23800 - hypothetical protein, at 4,540,977 to 4,541,324
_RS23800
LU632_RS23805: LU632_RS23805 - phage baseplate assembly protein V, at 4,541,321 to 4,542,076
_RS23805
LU632_RS23810: LU632_RS23810 - hypothetical protein, at 4,542,076 to 4,543,056
_RS23810
LU632_RS23815: LU632_RS23815 - hypothetical protein, at 4,543,092 to 4,543,391
_RS23815
LU632_RS23820: LU632_RS23820 - hypothetical protein, at 4,543,381 to 4,543,770
_RS23820
LU632_RS23825: LU632_RS23825 - hypothetical protein, at 4,543,814 to 4,543,987
_RS23825
Position (kb) 4542
4543
4544 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4541.122 kb on + strand, within LU632_RS23800 at 4541.122 kb on + strand, within LU632_RS23800 at 4541.122 kb on + strand, within LU632_RS23800 at 4541.123 kb on - strand, within LU632_RS23800 at 4541.125 kb on + strand, within LU632_RS23800 at 4541.126 kb on - strand, within LU632_RS23800 at 4541.135 kb on + strand, within LU632_RS23800 at 4541.135 kb on + strand, within LU632_RS23800 at 4541.136 kb on - strand, within LU632_RS23800 at 4541.136 kb on - strand, within LU632_RS23800 at 4541.136 kb on - strand, within LU632_RS23800 at 4541.137 kb on + strand, within LU632_RS23800 at 4541.495 kb on - strand, within LU632_RS23805 at 4541.578 kb on + strand, within LU632_RS23805 at 4541.627 kb on + strand, within LU632_RS23805 at 4541.628 kb on - strand, within LU632_RS23805 at 4541.628 kb on - strand, within LU632_RS23805 at 4541.628 kb on - strand, within LU632_RS23805 at 4541.628 kb on - strand, within LU632_RS23805 at 4541.705 kb on + strand, within LU632_RS23805 at 4541.767 kb on + strand, within LU632_RS23805 at 4542.078 kb on - strand at 4542.078 kb on - strand at 4542.148 kb on - strand at 4542.149 kb on + strand at 4542.149 kb on + strand at 4542.149 kb on + strand at 4542.150 kb on - strand at 4542.150 kb on - strand at 4542.150 kb on - strand at 4542.150 kb on - strand at 4542.150 kb on - strand at 4542.150 kb on - strand at 4542.150 kb on - strand at 4542.199 kb on - strand, within LU632_RS23810 at 4542.199 kb on - strand, within LU632_RS23810 at 4542.200 kb on + strand, within LU632_RS23810 at 4542.200 kb on + strand, within LU632_RS23810 at 4542.200 kb on + strand, within LU632_RS23810 at 4542.201 kb on - strand, within LU632_RS23810 at 4542.201 kb on - strand, within LU632_RS23810 at 4542.201 kb on - strand, within LU632_RS23810 at 4542.372 kb on + strand, within LU632_RS23810 at 4542.375 kb on + strand, within LU632_RS23810 at 4542.476 kb on + strand, within LU632_RS23810 at 4542.476 kb on + strand, within LU632_RS23810 at 4542.476 kb on + strand, within LU632_RS23810 at 4542.476 kb on + strand, within LU632_RS23810 at 4542.477 kb on - strand, within LU632_RS23810 at 4542.477 kb on - strand, within LU632_RS23810 at 4542.477 kb on - strand, within LU632_RS23810 at 4542.477 kb on - strand, within LU632_RS23810 at 4542.477 kb on - strand, within LU632_RS23810 at 4542.480 kb on + strand, within LU632_RS23810 at 4542.480 kb on + strand, within LU632_RS23810 at 4542.480 kb on + strand, within LU632_RS23810 at 4542.480 kb on + strand, within LU632_RS23810 at 4542.481 kb on - strand, within LU632_RS23810 at 4542.514 kb on - strand, within LU632_RS23810 at 4542.515 kb on + strand, within LU632_RS23810 at 4542.515 kb on + strand, within LU632_RS23810 at 4542.515 kb on + strand, within LU632_RS23810 at 4542.516 kb on - strand, within LU632_RS23810 at 4542.516 kb on - strand, within LU632_RS23810 at 4542.516 kb on - strand, within LU632_RS23810 at 4542.709 kb on - strand, within LU632_RS23810 at 4542.757 kb on - strand, within LU632_RS23810 at 4542.800 kb on + strand, within LU632_RS23810 at 4542.830 kb on + strand, within LU632_RS23810 at 4542.925 kb on + strand, within LU632_RS23810 at 4542.926 kb on - strand, within LU632_RS23810 at 4542.963 kb on + strand at 4542.963 kb on + strand at 4542.963 kb on + strand at 4542.963 kb on + strand at 4542.964 kb on - strand at 4542.964 kb on - strand at 4542.964 kb on - strand at 4542.964 kb on - strand at 4542.964 kb on - strand at 4542.964 kb on - strand at 4542.964 kb on - strand at 4542.973 kb on - strand at 4543.101 kb on - strand at 4543.201 kb on + strand, within LU632_RS23815 at 4543.213 kb on - strand, within LU632_RS23815 at 4543.237 kb on - strand, within LU632_RS23815 at 4543.275 kb on - strand, within LU632_RS23815 at 4543.308 kb on - strand, within LU632_RS23815 at 4543.308 kb on - strand, within LU632_RS23815 at 4543.344 kb on - strand, within LU632_RS23815 at 4543.494 kb on + strand, within LU632_RS23820 at 4543.494 kb on + strand, within LU632_RS23820 at 4543.549 kb on + strand, within LU632_RS23820 at 4543.550 kb on - strand, within LU632_RS23820 at 4543.550 kb on - strand, within LU632_RS23820 at 4543.620 kb on + strand, within LU632_RS23820 at 4543.621 kb on - strand, within LU632_RS23820 at 4543.647 kb on + strand, within LU632_RS23820 at 4543.648 kb on - strand, within LU632_RS23820 at 4543.711 kb on + strand, within LU632_RS23820 at 4543.711 kb on + strand, within LU632_RS23820 at 4543.712 kb on - strand, within LU632_RS23820 at 4543.815 kb on + strand at 4543.816 kb on - strand at 4543.851 kb on - strand, within LU632_RS23825 at 4543.853 kb on - strand, within LU632_RS23825 at 4543.903 kb on + strand, within LU632_RS23825 at 4543.903 kb on + strand, within LU632_RS23825 at 4543.908 kb on + strand, within LU632_RS23825 at 4543.908 kb on + strand, within LU632_RS23825 at 4543.909 kb on - strand, within LU632_RS23825 at 4544.042 kb on + strand at 4544.042 kb on + strand at 4544.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 4,541,122 + LU632_RS23800 0.42 +0.3 4,541,122 + LU632_RS23800 0.42 +2.4 4,541,122 + LU632_RS23800 0.42 +2.1 4,541,123 - LU632_RS23800 0.42 -0.4 4,541,125 + LU632_RS23800 0.43 +1.0 4,541,126 - LU632_RS23800 0.43 +1.8 4,541,135 + LU632_RS23800 0.45 -0.2 4,541,135 + LU632_RS23800 0.45 -0.6 4,541,136 - LU632_RS23800 0.46 -0.8 4,541,136 - LU632_RS23800 0.46 -0.5 4,541,136 - LU632_RS23800 0.46 +0.4 4,541,137 + LU632_RS23800 0.46 -0.2 4,541,495 - LU632_RS23805 0.23 -0.3 4,541,578 + LU632_RS23805 0.34 -1.1 4,541,627 + LU632_RS23805 0.40 +0.8 4,541,628 - LU632_RS23805 0.41 -0.3 4,541,628 - LU632_RS23805 0.41 -1.1 4,541,628 - LU632_RS23805 0.41 -2.4 4,541,628 - LU632_RS23805 0.41 -0.2 4,541,705 + LU632_RS23805 0.51 +1.4 4,541,767 + LU632_RS23805 0.59 +0.3 4,542,078 - -2.4 4,542,078 - -0.9 4,542,148 - -0.1 4,542,149 + -0.1 4,542,149 + +0.7 4,542,149 + +1.9 4,542,150 - +1.3 4,542,150 - +1.0 4,542,150 - +0.8 4,542,150 - -2.0 4,542,150 - -0.5 4,542,150 - -0.4 4,542,150 - +0.9 4,542,199 - LU632_RS23810 0.13 -2.6 4,542,199 - LU632_RS23810 0.13 +4.2 4,542,200 + LU632_RS23810 0.13 -1.0 4,542,200 + LU632_RS23810 0.13 -0.8 4,542,200 + LU632_RS23810 0.13 -1.5 4,542,201 - LU632_RS23810 0.13 +0.8 4,542,201 - LU632_RS23810 0.13 -0.2 4,542,201 - LU632_RS23810 0.13 -0.5 4,542,372 + LU632_RS23810 0.30 +0.2 4,542,375 + LU632_RS23810 0.30 +1.0 4,542,476 + LU632_RS23810 0.41 +0.5 4,542,476 + LU632_RS23810 0.41 +1.6 4,542,476 + LU632_RS23810 0.41 -0.4 4,542,476 + LU632_RS23810 0.41 -0.5 4,542,477 - LU632_RS23810 0.41 -0.6 4,542,477 - LU632_RS23810 0.41 -0.2 4,542,477 - LU632_RS23810 0.41 +1.7 4,542,477 - LU632_RS23810 0.41 +0.3 4,542,477 - LU632_RS23810 0.41 -1.0 4,542,480 + LU632_RS23810 0.41 -0.1 4,542,480 + LU632_RS23810 0.41 +0.2 4,542,480 + LU632_RS23810 0.41 -0.2 4,542,480 + LU632_RS23810 0.41 -0.5 4,542,481 - LU632_RS23810 0.41 -1.0 4,542,514 - LU632_RS23810 0.45 -1.4 4,542,515 + LU632_RS23810 0.45 +0.9 4,542,515 + LU632_RS23810 0.45 +0.6 4,542,515 + LU632_RS23810 0.45 +0.2 4,542,516 - LU632_RS23810 0.45 -1.9 4,542,516 - LU632_RS23810 0.45 +1.3 4,542,516 - LU632_RS23810 0.45 -0.5 4,542,709 - LU632_RS23810 0.65 -1.6 4,542,757 - LU632_RS23810 0.69 -0.1 4,542,800 + LU632_RS23810 0.74 -2.2 4,542,830 + LU632_RS23810 0.77 +0.2 4,542,925 + LU632_RS23810 0.87 -1.4 4,542,926 - LU632_RS23810 0.87 +0.2 4,542,963 + -0.5 4,542,963 + -0.6 4,542,963 + -0.6 4,542,963 + -0.1 4,542,964 - +0.4 4,542,964 - +0.8 4,542,964 - -1.2 4,542,964 - +2.1 4,542,964 - +0.4 4,542,964 - +1.2 4,542,964 - -1.8 4,542,973 - -0.6 4,543,101 - +1.4 4,543,201 + LU632_RS23815 0.36 -1.7 4,543,213 - LU632_RS23815 0.40 +0.4 4,543,237 - LU632_RS23815 0.48 +0.0 4,543,275 - LU632_RS23815 0.61 -0.2 4,543,308 - LU632_RS23815 0.72 -1.5 4,543,308 - LU632_RS23815 0.72 +2.5 4,543,344 - LU632_RS23815 0.84 -0.0 4,543,494 + LU632_RS23820 0.29 -0.2 4,543,494 + LU632_RS23820 0.29 -0.6 4,543,549 + LU632_RS23820 0.43 -1.0 4,543,550 - LU632_RS23820 0.43 +0.2 4,543,550 - LU632_RS23820 0.43 -1.0 4,543,620 + LU632_RS23820 0.61 -0.5 4,543,621 - LU632_RS23820 0.62 +0.2 4,543,647 + LU632_RS23820 0.68 +0.3 4,543,648 - LU632_RS23820 0.68 +2.1 4,543,711 + LU632_RS23820 0.85 +0.2 4,543,711 + LU632_RS23820 0.85 -0.6 4,543,712 - LU632_RS23820 0.85 -0.6 4,543,815 + -2.4 4,543,816 - +0.6 4,543,851 - LU632_RS23825 0.21 +0.2 4,543,853 - LU632_RS23825 0.22 +0.8 4,543,903 + LU632_RS23825 0.51 -1.8 4,543,903 + LU632_RS23825 0.51 +1.8 4,543,908 + LU632_RS23825 0.54 +1.2 4,543,908 + LU632_RS23825 0.54 -0.8 4,543,909 - LU632_RS23825 0.55 -1.0 4,544,042 + +0.3 4,544,042 + -1.2 4,544,043 - +3.6
Or see this region's nucleotide sequence