Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23695

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,521,071	+		LU632_RS23690	0.33	+1.3
4,521,071	+		LU632_RS23690	0.33	-0.6
4,521,071	+		LU632_RS23690	0.33	+0.3
4,521,072	-		LU632_RS23690	0.33	-1.0
4,521,072	-		LU632_RS23690	0.33	+0.8
4,521,072	-		LU632_RS23690	0.33	+0.8
4,521,072	-		LU632_RS23690	0.33	+0.8
4,521,074	-		LU632_RS23690	0.33	-2.1
4,521,107	+		LU632_RS23690	0.36	+0.8
4,521,218	+		LU632_RS23690	0.47	+1.9
4,521,453	+		LU632_RS23690	0.69	-1.5
4,521,454	+		LU632_RS23690	0.69	-1.2
4,521,454	-		LU632_RS23690	0.69	+0.8
4,521,454	-		LU632_RS23690	0.69	-0.1
4,521,491	-		LU632_RS23690	0.73	+2.4
4,521,502	-		LU632_RS23690	0.74	-0.1
4,521,659	-		LU632_RS23690	0.89	-1.1
4,521,711	-				-0.7
4,521,719	-				-2.2
4,521,719	-				+0.7
4,521,741	-				+0.8
4,521,752	-				+0.2
4,521,763	+				-2.1
4,521,834	+				+0.0
4,521,835	-				-0.7
4,521,933	-				+1.1
4,521,996	+				-0.8
4,522,268	-		LU632_RS23695	0.70	-2.3
4,522,299	+		LU632_RS23695	0.81	-1.4
4,522,362	-				-1.8
4,522,373	+				+1.2
4,522,395	+				-0.5
4,522,395	+				-0.1
4,522,552	+		LU632_RS23700	0.38	-0.5
4,522,553	-		LU632_RS23700	0.38	-1.4
4,522,569	+		LU632_RS23700	0.42	-1.4
4,522,569	+		LU632_RS23700	0.42	-0.7
4,522,634	+		LU632_RS23700	0.58	+0.8
4,522,678	+		LU632_RS23700	0.69	+0.8
4,522,679	-		LU632_RS23700	0.69	-0.1
4,522,693	+		LU632_RS23700	0.72	-0.4
4,522,693	+		LU632_RS23700	0.72	+0.0
4,522,694	-		LU632_RS23700	0.73	-0.6
4,522,712	+		LU632_RS23700	0.77	-1.5
4,522,712	+		LU632_RS23700	0.77	-0.1
4,522,712	+		LU632_RS23700	0.77	+0.6
4,522,713	-		LU632_RS23700	0.77	+0.7
4,522,799	+				+0.0
4,522,872	-				+0.2
4,522,874	+				-3.3
4,522,875	-				+0.1
4,522,902	+				-0.1
4,522,902	+				-1.1
4,523,169	+				-2.1
4,523,195	+				-2.4
4,523,280	-		LU632_RS23705	0.14	-1.2
4,523,280	-		LU632_RS23705	0.14	-1.9
4,523,314	+		LU632_RS23705	0.17	-0.1
4,523,314	+		LU632_RS23705	0.17	+0.6
4,523,315	-		LU632_RS23705	0.17	+0.5
4,523,315	-		LU632_RS23705	0.17	-0.3
4,523,315	-		LU632_RS23705	0.17	+0.1
4,523,315	-		LU632_RS23705	0.17	+2.4
4,523,347	-		LU632_RS23705	0.20	+0.8