Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23635

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,509,079	-				+2.7
4,509,228	+				-2.2
4,509,229	-				-0.1
4,509,231	+				+1.0
4,509,231	+				+0.0
4,509,232	-				+0.2
4,509,237	+				-0.5
4,509,238	-				+0.9
4,509,274	+				-1.8
4,509,274	+				+0.3
4,509,275	-				+0.2
4,509,275	-				-1.7
4,509,300	-				-2.5
4,509,300	-				+0.1
4,509,337	-				-0.7
4,509,351	+				-0.7
4,509,351	+				+0.7
4,509,352	-				-0.6
4,509,352	-				+0.1
4,509,352	-				-1.0
4,509,386	-				-0.2
4,509,463	-		LU632_RS23635	0.19	+0.6
4,509,494	+		LU632_RS23635	0.23	-0.1
4,509,494	+		LU632_RS23635	0.23	+1.1
4,509,495	-		LU632_RS23635	0.24	-0.0
4,509,511	-		LU632_RS23635	0.26	-0.3
4,509,538	+		LU632_RS23635	0.30	+2.8
4,509,539	-		LU632_RS23635	0.30	-1.2
4,509,539	-		LU632_RS23635	0.30	-2.2
4,509,578	-		LU632_RS23635	0.36	-0.5
4,509,649	-		LU632_RS23635	0.46	-0.7
4,509,649	-		LU632_RS23635	0.46	+2.0
4,509,649	-		LU632_RS23635	0.46	+1.8
4,509,649	-		LU632_RS23635	0.46	+0.7
4,509,650	+		LU632_RS23635	0.47	-0.8
4,509,650	+		LU632_RS23635	0.47	-1.4
4,509,650	+		LU632_RS23635	0.47	-0.0
4,509,650	+		LU632_RS23635	0.47	-0.5
4,509,651	-		LU632_RS23635	0.47	+0.5
4,509,746	-		LU632_RS23635	0.61	+0.5
4,509,787	+		LU632_RS23635	0.67	+1.7
4,509,787	+		LU632_RS23635	0.67	-1.0
4,509,787	+		LU632_RS23635	0.67	+0.2
4,509,787	+		LU632_RS23635	0.67	+0.5
4,509,787	+		LU632_RS23635	0.67	-1.2
4,509,788	-		LU632_RS23635	0.67	+1.0
4,509,788	-		LU632_RS23635	0.67	+1.8
4,509,887	+		LU632_RS23635	0.82	+0.8
4,509,935	+				-1.5
4,510,078	+				-2.1
4,510,078	+				-0.2
4,510,078	+				+0.2
4,510,079	-				-2.4
4,510,079	-				-0.5
4,510,079	-				-1.7
4,510,194	-		LU632_RS23640	0.14	-0.6
4,510,347	+		LU632_RS23640	0.22	-1.0
4,510,347	+		LU632_RS23640	0.22	+1.1
4,510,348	-		LU632_RS23640	0.22	+2.0
4,510,348	-		LU632_RS23640	0.22	-1.0
4,510,402	+		LU632_RS23640	0.25	+0.5
4,510,445	-		LU632_RS23640	0.27	+1.0
4,510,536	-		LU632_RS23640	0.32	+0.8
4,510,720	-		LU632_RS23640	0.42	-0.8
4,510,720	-		LU632_RS23640	0.42	-1.1
4,510,720	-		LU632_RS23640	0.42	+0.2
4,510,912	-		LU632_RS23640	0.52	-0.3
4,510,912	-		LU632_RS23640	0.52	+1.3
4,510,916	-		LU632_RS23640	0.53	-1.2
4,510,917	+		LU632_RS23640	0.53	+0.5
4,510,918	-		LU632_RS23640	0.53	-1.0