Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23210

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,420,416	+		LU632_RS23195	0.72	+0.0
4,420,488	-				+0.4
4,420,531	+				-1.9
4,420,629	+		LU632_RS23200	0.13	+0.5
4,420,630	-		LU632_RS23200	0.13	+0.5
4,420,660	+		LU632_RS23200	0.19	+0.5
4,420,820	+		LU632_RS23200	0.52	-0.4
4,420,951	+		LU632_RS23200	0.79	-0.5
4,420,951	+		LU632_RS23200	0.79	-0.3
4,421,027	-				+0.1
4,421,073	+		LU632_RS23205	0.16	-0.1
4,421,073	+		LU632_RS23205	0.16	+0.9
4,421,074	-		LU632_RS23205	0.17	-1.5
4,421,079	-		LU632_RS23205	0.20	-1.7
4,421,079	-		LU632_RS23205	0.20	-0.4
4,421,079	-		LU632_RS23205	0.20	+2.4
4,421,128	+		LU632_RS23205	0.52	+0.7
4,421,128	+		LU632_RS23205	0.52	-2.0
4,421,272	+				-0.5
4,421,272	+				-1.3
4,421,272	+				+1.3
4,421,279	+				+0.4
4,421,329	-				+2.0
4,421,331	+				-0.9
4,421,361	+				-1.0
4,421,401	+		LU632_RS23210	0.15	-2.1
4,421,433	-		LU632_RS23210	0.22	+1.2
4,421,441	+		LU632_RS23210	0.24	-0.1
4,421,504	+		LU632_RS23210	0.38	+0.3
4,421,534	+		LU632_RS23210	0.45	-0.3
4,421,535	-		LU632_RS23210	0.45	-0.0
4,421,663	+		LU632_RS23210	0.74	+1.9
4,421,674	-		LU632_RS23210	0.76	-1.3
4,421,700	+		LU632_RS23210	0.82	-0.9
4,421,700	+		LU632_RS23210	0.82	-0.1
4,421,701	-		LU632_RS23210	0.82	-0.1
4,421,733	+		LU632_RS23210	0.89	-0.0
4,421,742	+				+1.1
4,421,806	+				-0.0
4,421,807	-				-1.3
4,421,807	-				-1.7
4,421,809	-				-0.3
4,421,874	+				+0.9
4,421,900	+				+1.1
4,421,900	+				+1.3
4,421,900	+				-0.2
4,421,901	-				-1.1
4,421,951	+				+0.2
4,421,951	+				+0.5
4,421,951	+				+1.4
4,422,034	-		LU632_RS23215	0.59	+1.2
4,422,204	-		LU632_RS23220	0.55	+1.1
4,422,229	+		LU632_RS23220	0.63	-2.0
4,422,306	-				+0.3
4,422,402	+				+1.0
4,422,402	+				-0.0
4,422,402	+				-0.3
4,422,402	+				-0.2
4,422,403	-				-0.1
4,422,403	-				-1.0
4,422,404	+				+1.1
4,422,404	+				+0.1
4,422,404	+				+0.4
4,422,405	-				+1.1
4,422,405	-				-0.8
4,422,405	-				-1.6
4,422,425	+				-0.6
4,422,425	+				-0.6
4,422,426	-				+0.3
4,422,429	+				+0.0
4,422,509	+		LU632_RS23225	0.25	+0.5
4,422,510	-		LU632_RS23225	0.26	+2.1
4,422,513	+		LU632_RS23225	0.28	-2.0
4,422,525	+		LU632_RS23225	0.35	+0.2
4,422,526	-		LU632_RS23225	0.36	-1.0
4,422,631	-				+0.6
4,422,701	+				-0.3
4,422,702	-				-0.1
4,422,703	+				+0.4
4,422,704	-				+0.6
4,422,723	+				-0.4