Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23115

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,403,026	-				-1.1
4,403,318	+				-0.4
4,403,361	+				+0.8
4,404,185	+		LU632_RS23115	0.16	+0.2
4,404,186	+		LU632_RS23115	0.16	+2.3
4,404,186	+		LU632_RS23115	0.16	-1.2
4,404,187	-		LU632_RS23115	0.16	+1.0
4,404,187	-		LU632_RS23115	0.16	-0.9
4,404,187	-		LU632_RS23115	0.16	+1.6
4,404,187	-		LU632_RS23115	0.16	-0.8
4,404,214	-		LU632_RS23115	0.18	+2.3
4,404,237	-		LU632_RS23115	0.20	-1.3
4,404,237	-		LU632_RS23115	0.20	-1.7
4,404,240	+		LU632_RS23115	0.20	-1.2
4,404,240	+		LU632_RS23115	0.20	-1.2
4,404,248	+		LU632_RS23115	0.21	+0.3
4,404,249	-		LU632_RS23115	0.21	+2.7
4,404,329	+		LU632_RS23115	0.27	-0.3
4,404,523	-		LU632_RS23115	0.42	-0.0
4,404,523	-		LU632_RS23115	0.42	-0.1
4,404,566	+		LU632_RS23115	0.45	+0.1
4,404,665	+		LU632_RS23115	0.52	-0.5
4,404,724	-		LU632_RS23115	0.57	-0.9
4,404,801	+		LU632_RS23115	0.63	-1.3
4,404,802	-		LU632_RS23115	0.63	+1.0
4,404,878	+		LU632_RS23115	0.68	+0.5
4,405,288	-				+1.6
4,405,441	+				-0.5
4,405,441	+				+0.8
4,405,441	+				+0.3
4,405,441	+				+0.3
4,405,472	+		LU632_RS23120	0.12	+0.3
4,405,472	+		LU632_RS23120	0.12	+0.3
4,405,472	+		LU632_RS23120	0.12	-0.5
4,405,472	+		LU632_RS23120	0.12	+1.1
4,405,473	-		LU632_RS23120	0.12	-0.1
4,405,528	+		LU632_RS23120	0.17	+1.7
4,405,528	+		LU632_RS23120	0.17	-1.3
4,405,529	-		LU632_RS23120	0.17	-0.0
4,405,568	-		LU632_RS23120	0.20	-1.6
4,405,780	-		LU632_RS23120	0.37	+1.3
4,405,810	+		LU632_RS23120	0.39	+0.1
4,405,810	+		LU632_RS23120	0.39	-1.9
4,405,811	-		LU632_RS23120	0.39	-0.4
4,405,822	+		LU632_RS23120	0.40	-0.3
4,405,822	+		LU632_RS23120	0.40	+3.7
4,405,823	-		LU632_RS23120	0.40	-2.8
4,405,858	+		LU632_RS23120	0.43	+1.7
4,405,859	-		LU632_RS23120	0.43	-0.9
4,405,859	-		LU632_RS23120	0.43	+0.1
4,405,999	-		LU632_RS23120	0.54	-0.2
4,406,062	-		LU632_RS23120	0.59	-0.5
4,406,062	-		LU632_RS23120	0.59	-0.8
4,406,062	-		LU632_RS23120	0.59	-1.0
4,406,211	+		LU632_RS23120	0.71	+0.1
4,406,211	+		LU632_RS23120	0.71	-0.5
4,406,212	-		LU632_RS23120	0.71	-0.5
4,406,225	-		LU632_RS23120	0.72	+0.5
4,406,252	-		LU632_RS23120	0.74	+0.2
4,406,254	+		LU632_RS23120	0.74	+0.1
4,406,255	-		LU632_RS23120	0.75	+0.4
4,406,274	+		LU632_RS23120	0.76	+1.4