Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23050

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,389,824	+				+0.4
4,389,849	-				+0.7
4,390,031	-	ssb	LU632_RS23040	0.60	-1.0
4,390,041	-	ssb	LU632_RS23040	0.67	-1.0
4,390,041	-	ssb	LU632_RS23040	0.67	+1.5
4,390,041	-	ssb	LU632_RS23040	0.67	+1.9
4,390,041	-	ssb	LU632_RS23040	0.67	+0.4
4,390,056	+	ssb	LU632_RS23040	0.77	+0.1
4,390,056	+	ssb	LU632_RS23040	0.77	+0.9
4,390,057	-	ssb	LU632_RS23040	0.77	-1.0
4,390,080	+				-1.3
4,390,480	+				-1.4
4,390,618	+				+0.4
4,390,628	+				-1.5
4,390,629	-				-0.9
4,390,631	+				+1.0
4,390,631	+				-1.9
4,390,631	+				+0.1
4,390,631	+				+0.1
4,390,632	-				-1.8
4,390,632	-				+1.5
4,390,632	-				+1.3
4,390,632	-				+0.8
4,390,633	+				-2.1
4,390,633	+				-0.3
4,390,633	+				-0.6
4,390,634	-				-0.2
4,390,634	-				-0.4
4,390,683	+				+0.8
4,390,684	-				+0.8
4,390,785	-				-2.6
4,390,809	+				-0.3
4,390,823	-		LU632_RS23050	0.11	+0.9
4,390,834	+		LU632_RS23050	0.15	+0.1
4,390,834	+		LU632_RS23050	0.15	-0.6
4,390,931	-		LU632_RS23050	0.53	+5.0
4,390,957	-		LU632_RS23050	0.64	+1.3
4,391,031	+				-1.1
4,391,031	+				+0.9
4,391,032	-				+0.4
4,391,036	-				-0.5
4,391,055	+				+0.5
4,391,056	-				+0.1
4,391,115	-				+4.8
4,391,115	-				-0.6
4,391,115	-				+0.4
4,391,225	-				+0.2
4,391,433	+				+1.8
4,391,433	+				-1.2
4,391,434	-				-1.0
4,391,446	+				+0.7
4,391,446	+				-0.8
4,391,480	+				-0.1
4,391,481	-				-0.1
4,391,642	+				-1.8
4,391,647	-				+1.2
4,391,700	+				+0.5
4,391,701	-				-1.0
4,391,723	+				-0.8
4,391,723	+				+0.9
4,391,724	-				-2.4
4,391,770	+				+0.9
4,391,821	-				+0.4
4,391,986	+				-0.1
4,392,007	+				+1.6