Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompR and LU632_RS22945 are separated by 72 nucleotides LU632_RS22945 and greB are separated by 14 nucleotides greB and LU632_RS22955 are separated by 93 nucleotides LU632_RS22955 and feoA are separated by 146 nucleotides feoA and feoB are separated by 13 nucleotides
LU632_RS22940: ompR - two-component system response regulator OmpR, at 4,370,882 to 4,371,601
ompR
LU632_RS22945: LU632_RS22945 - hypothetical protein, at 4,371,674 to 4,371,889
_RS22945
LU632_RS22950: greB - transcription elongation factor GreB, at 4,371,904 to 4,372,383
greB
LU632_RS22955: LU632_RS22955 - RNA-binding transcriptional accessory protein, at 4,372,477 to 4,374,795
_RS22955
LU632_RS22960: feoA - ferrous iron transporter A, at 4,374,942 to 4,375,166
feoA
LU632_RS22965: feoB - Fe(2+) transporter permease subunit FeoB, at 4,375,180 to 4,377,480
feoB
Position (kb) 4372
4373
4374
4375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4371.662 kb on + strand at 4371.662 kb on + strand at 4371.680 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.683 kb on - strand at 4371.747 kb on + strand, within LU632_RS22945 at 4371.878 kb on - strand at 4371.913 kb on - strand at 4372.046 kb on - strand, within greB at 4372.051 kb on + strand, within greB at 4372.051 kb on + strand, within greB at 4372.052 kb on - strand, within greB at 4372.052 kb on - strand, within greB at 4372.093 kb on + strand, within greB at 4372.094 kb on - strand, within greB at 4372.132 kb on + strand, within greB at 4372.246 kb on - strand, within greB at 4372.252 kb on + strand, within greB at 4372.252 kb on + strand, within greB at 4372.252 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.323 kb on + strand, within greB at 4372.348 kb on + strand at 4372.349 kb on - strand at 4372.392 kb on + strand at 4372.393 kb on - strand at 4372.443 kb on + strand at 4372.443 kb on + strand at 4372.444 kb on - strand at 4372.444 kb on - strand at 4372.444 kb on - strand at 4372.471 kb on + strand at 4372.471 kb on + strand at 4372.504 kb on - strand at 4372.599 kb on + strand at 4372.755 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.804 kb on - strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.910 kb on - strand, within LU632_RS22955 at 4373.099 kb on - strand, within LU632_RS22955 at 4373.103 kb on + strand, within LU632_RS22955 at 4373.262 kb on + strand, within LU632_RS22955 at 4373.301 kb on + strand, within LU632_RS22955 at 4373.302 kb on - strand, within LU632_RS22955 at 4373.406 kb on - strand, within LU632_RS22955 at 4373.406 kb on - strand, within LU632_RS22955 at 4373.549 kb on - strand, within LU632_RS22955 at 4373.549 kb on - strand, within LU632_RS22955 at 4373.700 kb on - strand, within LU632_RS22955 at 4373.700 kb on - strand, within LU632_RS22955 at 4373.876 kb on + strand, within LU632_RS22955 at 4373.877 kb on - strand, within LU632_RS22955 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.142 kb on - strand, within LU632_RS22955 at 4374.144 kb on + strand, within LU632_RS22955 at 4374.144 kb on + strand, within LU632_RS22955 at 4374.459 kb on - strand, within LU632_RS22955 at 4374.459 kb on - strand, within LU632_RS22955 at 4374.510 kb on - strand, within LU632_RS22955 at 4374.513 kb on + strand, within LU632_RS22955 at 4374.513 kb on + strand, within LU632_RS22955 at 4374.514 kb on - strand, within LU632_RS22955 at 4374.514 kb on - strand, within LU632_RS22955 at 4374.553 kb on - strand, within LU632_RS22955 at 4374.843 kb on + strand at 4374.868 kb on + strand at 4374.937 kb on + strand at 4374.938 kb on - strand at 4374.938 kb on - strand at 4374.941 kb on + strand at 4374.941 kb on + strand at 4374.941 kb on + strand at 4374.950 kb on + strand at 4374.951 kb on - strand at 4374.963 kb on + strand at 4374.963 kb on + strand at 4374.967 kb on - strand, within feoA at 4375.177 kb on - strand at 4375.177 kb on - strand at 4375.179 kb on + strand at 4375.179 kb on + strand at 4375.203 kb on - strand at 4375.299 kb on + strand at 4375.360 kb on + strand at 4375.407 kb on + strand at 4375.422 kb on - strand, within feoB at 4375.480 kb on - strand, within feoB at 4375.486 kb on + strand, within feoB at 4375.539 kb on + strand, within feoB at 4375.540 kb on - strand, within feoB at 4375.566 kb on + strand, within feoB at 4375.567 kb on - strand, within feoB at 4375.614 kb on + strand, within feoB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 4,371,662 + -1.4 4,371,662 + -0.3 4,371,680 + -0.9 4,371,682 + -1.6 4,371,682 + -1.7 4,371,682 + -1.1 4,371,682 + -0.5 4,371,683 - +0.8 4,371,747 + LU632_RS22945 0.34 -0.4 4,371,878 - -1.8 4,371,913 - +0.9 4,372,046 - greB LU632_RS22950 0.30 +0.5 4,372,051 + greB LU632_RS22950 0.31 +0.4 4,372,051 + greB LU632_RS22950 0.31 -0.3 4,372,052 - greB LU632_RS22950 0.31 +0.4 4,372,052 - greB LU632_RS22950 0.31 +0.4 4,372,093 + greB LU632_RS22950 0.39 +0.1 4,372,094 - greB LU632_RS22950 0.40 +1.1 4,372,132 + greB LU632_RS22950 0.47 +0.6 4,372,246 - greB LU632_RS22950 0.71 +0.7 4,372,252 + greB LU632_RS22950 0.72 +2.0 4,372,252 + greB LU632_RS22950 0.72 +1.4 4,372,252 + greB LU632_RS22950 0.72 +1.3 4,372,310 + greB LU632_RS22950 0.85 +2.5 4,372,310 + greB LU632_RS22950 0.85 +1.3 4,372,310 + greB LU632_RS22950 0.85 +0.1 4,372,311 - greB LU632_RS22950 0.85 +1.8 4,372,311 - greB LU632_RS22950 0.85 +0.9 4,372,311 - greB LU632_RS22950 0.85 -0.1 4,372,311 - greB LU632_RS22950 0.85 -0.0 4,372,311 - greB LU632_RS22950 0.85 +0.3 4,372,311 - greB LU632_RS22950 0.85 +0.4 4,372,323 + greB LU632_RS22950 0.87 +1.9 4,372,348 + +1.6 4,372,349 - +1.0 4,372,392 + -0.1 4,372,393 - -1.5 4,372,443 + +2.4 4,372,443 + +0.7 4,372,444 - -0.8 4,372,444 - -0.6 4,372,444 - +0.1 4,372,471 + -0.3 4,372,471 + -0.2 4,372,504 - +0.1 4,372,599 + -0.2 4,372,755 + LU632_RS22955 0.12 -2.4 4,372,786 + LU632_RS22955 0.13 +0.8 4,372,786 + LU632_RS22955 0.13 +0.3 4,372,786 + LU632_RS22955 0.13 +1.1 4,372,786 + LU632_RS22955 0.13 +1.1 4,372,786 + LU632_RS22955 0.13 -0.0 4,372,787 - LU632_RS22955 0.13 -0.6 4,372,787 - LU632_RS22955 0.13 -1.4 4,372,787 - LU632_RS22955 0.13 -0.4 4,372,804 - LU632_RS22955 0.14 -0.4 4,372,909 + LU632_RS22955 0.19 -2.8 4,372,909 + LU632_RS22955 0.19 +1.7 4,372,909 + LU632_RS22955 0.19 -0.0 4,372,910 - LU632_RS22955 0.19 -1.4 4,373,099 - LU632_RS22955 0.27 +0.1 4,373,103 + LU632_RS22955 0.27 -0.3 4,373,262 + LU632_RS22955 0.34 -1.1 4,373,301 + LU632_RS22955 0.36 -1.3 4,373,302 - LU632_RS22955 0.36 +1.1 4,373,406 - LU632_RS22955 0.40 -1.3 4,373,406 - LU632_RS22955 0.40 +1.1 4,373,549 - LU632_RS22955 0.46 -2.2 4,373,549 - LU632_RS22955 0.46 -1.5 4,373,700 - LU632_RS22955 0.53 +0.5 4,373,700 - LU632_RS22955 0.53 -0.9 4,373,876 + LU632_RS22955 0.60 +0.1 4,373,877 - LU632_RS22955 0.60 -1.1 4,374,034 - LU632_RS22955 0.67 -1.2 4,374,034 - LU632_RS22955 0.67 -0.3 4,374,034 - LU632_RS22955 0.67 -1.1 4,374,142 - LU632_RS22955 0.72 +0.3 4,374,144 + LU632_RS22955 0.72 +1.0 4,374,144 + LU632_RS22955 0.72 -0.6 4,374,459 - LU632_RS22955 0.85 -0.3 4,374,459 - LU632_RS22955 0.85 -1.3 4,374,510 - LU632_RS22955 0.88 -0.3 4,374,513 + LU632_RS22955 0.88 -0.3 4,374,513 + LU632_RS22955 0.88 -0.6 4,374,514 - LU632_RS22955 0.88 +0.6 4,374,514 - LU632_RS22955 0.88 -1.8 4,374,553 - LU632_RS22955 0.90 -0.2 4,374,843 + +2.4 4,374,868 + +1.2 4,374,937 + -1.0 4,374,938 - -1.1 4,374,938 - +0.1 4,374,941 + -1.5 4,374,941 + +3.3 4,374,941 + -1.2 4,374,950 + -0.4 4,374,951 - +1.0 4,374,963 + -2.9 4,374,963 + +2.2 4,374,967 - feoA LU632_RS22960 0.11 -0.3 4,375,177 - -1.7 4,375,177 - -1.6 4,375,179 + +0.1 4,375,179 + -0.6 4,375,203 - -0.5 4,375,299 + -1.3 4,375,360 + +4.0 4,375,407 + -2.0 4,375,422 - feoB LU632_RS22965 0.11 +1.8 4,375,480 - feoB LU632_RS22965 0.13 -0.5 4,375,486 + feoB LU632_RS22965 0.13 +0.4 4,375,539 + feoB LU632_RS22965 0.16 -0.3 4,375,540 - feoB LU632_RS22965 0.16 -3.1 4,375,566 + feoB LU632_RS22965 0.17 +1.1 4,375,567 - feoB LU632_RS22965 0.17 +0.0 4,375,614 + feoB LU632_RS22965 0.19 -0.3
Or see this region's nucleotide sequence