Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkA and LU632_RS22490 are separated by 152 nucleotides LU632_RS22490 and LU632_RS22495 are separated by 226 nucleotides LU632_RS22495 and LU632_RS22500 overlap by 32 nucleotides
LU632_RS22485: trkA - Trk system potassium transporter TrkA, at 4,296,579 to 4,297,955
trkA
LU632_RS22490: LU632_RS22490 - transposase, at 4,298,108 to 4,298,316
_RS22490
LU632_RS22495: LU632_RS22495 - hypothetical protein, at 4,298,543 to 4,298,779
_RS22495
LU632_RS22500: LU632_RS22500 - DNA adenine methylase, at 4,298,748 to 4,299,533
_RS22500
Position (kb) 4298
4299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4297.110 kb on - strand, within trkA at 4297.110 kb on - strand, within trkA at 4297.110 kb on - strand, within trkA at 4297.120 kb on + strand, within trkA at 4297.120 kb on + strand, within trkA at 4297.121 kb on - strand, within trkA at 4297.179 kb on - strand, within trkA at 4297.181 kb on + strand, within trkA at 4297.182 kb on - strand, within trkA at 4297.185 kb on - strand, within trkA at 4297.186 kb on + strand, within trkA at 4297.186 kb on + strand, within trkA at 4297.186 kb on - strand, within trkA at 4297.187 kb on - strand, within trkA at 4297.204 kb on + strand, within trkA at 4297.205 kb on - strand, within trkA at 4297.229 kb on + strand, within trkA at 4297.272 kb on + strand, within trkA at 4297.342 kb on - strand, within trkA at 4297.414 kb on + strand, within trkA at 4297.414 kb on + strand, within trkA at 4297.415 kb on - strand, within trkA at 4297.420 kb on - strand, within trkA at 4297.445 kb on - strand, within trkA at 4297.557 kb on - strand, within trkA at 4297.557 kb on - strand, within trkA at 4297.566 kb on - strand, within trkA at 4297.574 kb on + strand, within trkA at 4297.607 kb on - strand, within trkA at 4297.652 kb on - strand, within trkA at 4297.663 kb on + strand, within trkA at 4297.663 kb on + strand, within trkA at 4297.664 kb on - strand, within trkA at 4297.668 kb on - strand, within trkA at 4297.676 kb on + strand, within trkA at 4297.676 kb on + strand, within trkA at 4297.696 kb on + strand, within trkA at 4297.697 kb on - strand, within trkA at 4297.781 kb on + strand, within trkA at 4297.782 kb on - strand, within trkA at 4297.800 kb on - strand, within trkA at 4297.805 kb on + strand, within trkA at 4297.835 kb on - strand at 4297.835 kb on - strand at 4297.848 kb on - strand at 4297.959 kb on - strand at 4297.968 kb on + strand at 4298.075 kb on - strand at 4298.075 kb on - strand at 4298.075 kb on - strand at 4298.398 kb on - strand at 4298.398 kb on - strand at 4298.787 kb on + strand at 4298.907 kb on - strand, within LU632_RS22500 at 4299.013 kb on + strand, within LU632_RS22500 at 4299.045 kb on + strand, within LU632_RS22500 at 4299.130 kb on - strand, within LU632_RS22500 at 4299.130 kb on - strand, within LU632_RS22500 at 4299.207 kb on + strand, within LU632_RS22500 at 4299.234 kb on + strand, within LU632_RS22500 at 4299.234 kb on + strand, within LU632_RS22500 at 4299.235 kb on - strand, within LU632_RS22500 at 4299.235 kb on - strand, within LU632_RS22500 at 4299.305 kb on + strand, within LU632_RS22500
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 4,297,110 - trkA LU632_RS22485 0.39 -1.2 4,297,110 - trkA LU632_RS22485 0.39 +0.5 4,297,110 - trkA LU632_RS22485 0.39 -2.5 4,297,120 + trkA LU632_RS22485 0.39 -0.9 4,297,120 + trkA LU632_RS22485 0.39 -0.2 4,297,121 - trkA LU632_RS22485 0.39 -0.8 4,297,179 - trkA LU632_RS22485 0.44 -2.0 4,297,181 + trkA LU632_RS22485 0.44 +0.1 4,297,182 - trkA LU632_RS22485 0.44 -0.3 4,297,185 - trkA LU632_RS22485 0.44 -0.9 4,297,186 + trkA LU632_RS22485 0.44 +1.7 4,297,186 + trkA LU632_RS22485 0.44 -2.0 4,297,186 - trkA LU632_RS22485 0.44 +0.7 4,297,187 - trkA LU632_RS22485 0.44 -0.0 4,297,204 + trkA LU632_RS22485 0.45 +0.0 4,297,205 - trkA LU632_RS22485 0.45 -1.8 4,297,229 + trkA LU632_RS22485 0.47 -2.0 4,297,272 + trkA LU632_RS22485 0.50 -1.6 4,297,342 - trkA LU632_RS22485 0.55 -0.2 4,297,414 + trkA LU632_RS22485 0.61 -1.8 4,297,414 + trkA LU632_RS22485 0.61 +3.1 4,297,415 - trkA LU632_RS22485 0.61 +0.9 4,297,420 - trkA LU632_RS22485 0.61 -1.4 4,297,445 - trkA LU632_RS22485 0.63 -0.2 4,297,557 - trkA LU632_RS22485 0.71 +0.6 4,297,557 - trkA LU632_RS22485 0.71 +0.3 4,297,566 - trkA LU632_RS22485 0.72 -1.4 4,297,574 + trkA LU632_RS22485 0.72 -0.7 4,297,607 - trkA LU632_RS22485 0.75 -1.1 4,297,652 - trkA LU632_RS22485 0.78 -3.0 4,297,663 + trkA LU632_RS22485 0.79 +1.7 4,297,663 + trkA LU632_RS22485 0.79 +0.1 4,297,664 - trkA LU632_RS22485 0.79 -2.0 4,297,668 - trkA LU632_RS22485 0.79 -1.4 4,297,676 + trkA LU632_RS22485 0.80 -1.3 4,297,676 + trkA LU632_RS22485 0.80 -0.5 4,297,696 + trkA LU632_RS22485 0.81 -1.1 4,297,697 - trkA LU632_RS22485 0.81 -0.9 4,297,781 + trkA LU632_RS22485 0.87 -1.3 4,297,782 - trkA LU632_RS22485 0.87 -0.6 4,297,800 - trkA LU632_RS22485 0.89 -1.1 4,297,805 + trkA LU632_RS22485 0.89 -0.9 4,297,835 - -1.8 4,297,835 - -1.9 4,297,848 - +0.7 4,297,959 - +1.0 4,297,968 + -2.3 4,298,075 - -0.9 4,298,075 - -0.7 4,298,075 - +1.8 4,298,398 - -0.0 4,298,398 - +0.5 4,298,787 + +0.1 4,298,907 - LU632_RS22500 0.20 +0.6 4,299,013 + LU632_RS22500 0.34 -0.4 4,299,045 + LU632_RS22500 0.38 +2.1 4,299,130 - LU632_RS22500 0.49 -1.6 4,299,130 - LU632_RS22500 0.49 +0.3 4,299,207 + LU632_RS22500 0.58 +0.4 4,299,234 + LU632_RS22500 0.62 +2.0 4,299,234 + LU632_RS22500 0.62 -0.3 4,299,235 - LU632_RS22500 0.62 +2.5 4,299,235 - LU632_RS22500 0.62 -2.1 4,299,305 + LU632_RS22500 0.71 -0.3
Or see this region's nucleotide sequence