Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22295

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,258,461	+		LU632_RS22290	0.73	+0.5
4,258,461	+		LU632_RS22290	0.73	+0.1
4,258,461	+		LU632_RS22290	0.73	-1.2
4,258,462	-		LU632_RS22290	0.73	-1.3
4,258,462	-		LU632_RS22290	0.73	+0.0
4,258,656	-				-1.2
4,258,668	-				-1.0
4,258,668	-				-0.4
4,258,670	-				+0.1
4,258,794	+				+0.8
4,258,832	+				+1.9
4,258,833	-				+0.4
4,258,836	+				-0.4
4,258,879	+				+1.9
4,258,944	+				-0.5
4,259,047	-				+0.8
4,259,109	+				-0.3
4,259,128	-				+0.7
4,259,161	+				-1.2
4,259,248	-				-1.1
4,259,248	-				-1.0
4,259,248	-				+0.6
4,259,248	-				-1.1
4,259,466	+	zur	LU632_RS22295	0.44	+1.0
4,259,467	-	zur	LU632_RS22295	0.44	-0.6
4,259,467	-	zur	LU632_RS22295	0.44	+1.7
4,259,492	+	zur	LU632_RS22295	0.49	-0.4
4,259,493	-	zur	LU632_RS22295	0.49	+1.3
4,259,542	+	zur	LU632_RS22295	0.59	-0.4
4,259,542	+	zur	LU632_RS22295	0.59	-1.5
4,259,542	+	zur	LU632_RS22295	0.59	+0.1
4,259,542	+	zur	LU632_RS22295	0.59	-2.8
4,259,542	+	zur	LU632_RS22295	0.59	+1.3
4,259,543	-	zur	LU632_RS22295	0.59	+0.7
4,259,543	-	zur	LU632_RS22295	0.59	-1.3
4,259,543	-	zur	LU632_RS22295	0.59	-1.1
4,259,543	-	zur	LU632_RS22295	0.59	-0.3
4,259,566	-	zur	LU632_RS22295	0.63	+0.4
4,259,598	+	zur	LU632_RS22295	0.69	-1.3
4,259,639	-	zur	LU632_RS22295	0.77	+1.7
4,259,647	+	zur	LU632_RS22295	0.79	-1.2
4,259,777	-				-1.3
4,259,796	-				+0.3
4,259,800	-				+0.1
4,260,005	-		LU632_RS22300	0.62	+1.3
4,260,006	+		LU632_RS22300	0.62	+0.3
4,260,006	+		LU632_RS22300	0.62	-0.5
4,260,007	-		LU632_RS22300	0.63	-0.3
4,260,007	-		LU632_RS22300	0.63	+0.4
4,260,305	+				+0.3
4,260,451	+		LU632_RS22305	0.53	-2.9
4,260,451	+		LU632_RS22305	0.53	-0.6
4,260,452	-		LU632_RS22305	0.53	-1.3
4,260,452	-		LU632_RS22305	0.53	+1.5
4,260,455	+		LU632_RS22305	0.55	-0.2
4,260,456	-		LU632_RS22305	0.55	-1.2
4,260,473	+		LU632_RS22305	0.64	-0.1
4,260,510	-				+1.4
4,260,529	+				-1.0
4,260,530	-				-0.6
4,260,530	-				+2.5
4,260,534	+				+0.0
4,260,534	+				+0.4
4,260,534	+				-0.3
4,260,535	-				-0.3
4,260,535	-				-2.6
4,260,535	-				-0.6
4,260,535	-				-1.2
4,260,535	-				+0.5
4,260,536	+				-0.6
4,260,537	-				-1.3
4,260,537	-				+0.2
4,260,590	+		LU632_RS22310	0.46	+0.0
4,260,590	+		LU632_RS22310	0.46	+0.4
4,260,591	-		LU632_RS22310	0.46	-0.8
4,260,604	-		LU632_RS22310	0.51	-1.5
4,260,604	-		LU632_RS22310	0.51	+1.1
4,260,604	-		LU632_RS22310	0.51	+1.3
4,260,654	+		LU632_RS22310	0.72	-0.7
4,260,655	-		LU632_RS22310	0.72	+0.1
4,260,655	-		LU632_RS22310	0.72	+0.9
4,260,660	-		LU632_RS22310	0.74	+0.2
4,260,660	-		LU632_RS22310	0.74	+1.1