Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22250

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,252,539	+		LU632_RS22240	0.52	-1.6
4,252,586	+		LU632_RS22240	0.65	-0.7
4,252,586	+		LU632_RS22240	0.65	-2.5
4,252,587	-		LU632_RS22240	0.66	+1.4
4,252,591	+		LU632_RS22240	0.67	-2.4
4,252,604	+		LU632_RS22240	0.70	+0.1
4,252,605	-		LU632_RS22240	0.71	+2.5
4,252,608	-		LU632_RS22240	0.72	+2.3
4,252,608	-		LU632_RS22240	0.72	+1.7
4,252,611	-		LU632_RS22240	0.72	+2.2
4,252,625	+		LU632_RS22240	0.76	+1.4
4,252,625	+		LU632_RS22240	0.76	-0.8
4,252,626	-		LU632_RS22240	0.77	-1.4
4,252,626	-		LU632_RS22240	0.77	+3.5
4,252,673	+				-0.2
4,252,675	+				+0.2
4,252,675	+				+0.1
4,252,675	+				-0.9
4,252,675	+				-0.7
4,252,675	+				-2.5
4,252,676	-				+0.5
4,252,676	-				+3.3
4,252,676	-				-1.1
4,252,676	-				+3.0
4,252,676	-				+0.4
4,252,705	+				+0.1
4,252,705	+				-2.5
4,252,724	-				+2.0
4,252,780	+		LU632_RS22245	0.10	-2.0
4,252,780	+		LU632_RS22245	0.10	+2.9
4,252,780	+		LU632_RS22245	0.10	+0.7
4,252,781	-		LU632_RS22245	0.11	+4.5
4,252,949	+		LU632_RS22245	0.85	+3.4
4,252,949	+		LU632_RS22245	0.85	+3.8
4,252,949	+		LU632_RS22245	0.85	+3.4
4,252,949	+		LU632_RS22245	0.85	+2.3
4,252,950	-		LU632_RS22245	0.86	+4.5
4,252,950	-		LU632_RS22245	0.86	+4.9
4,252,950	-		LU632_RS22245	0.86	-0.3
4,252,979	+				+1.3
4,252,979	+				-2.7
4,252,980	-				-1.6
4,252,980	-				+0.1
4,252,980	-				-2.1
4,253,089	+				+0.4
4,253,163	+				+0.9
4,253,223	-				-0.2
4,253,270	-				-0.1
4,253,431	-				-1.9
4,253,433	+				+0.9
4,253,562	+		LU632_RS22250	0.39	-0.7
4,253,729	+				-0.5
4,253,730	-				+2.1
4,253,730	-				+0.8
4,253,733	+				-0.1
4,253,823	+				+0.3
4,253,824	-				-1.6
4,253,826	-				+0.0
4,253,850	+				-0.7
4,253,864	+		LU632_RS22255	0.14	+0.6
4,253,864	+		LU632_RS22255	0.14	+0.1
4,253,868	+		LU632_RS22255	0.15	-2.4
4,253,869	-		LU632_RS22255	0.16	-1.0
4,253,869	-		LU632_RS22255	0.16	+1.6
4,254,036	+		LU632_RS22255	0.76	+1.5
4,254,036	+		LU632_RS22255	0.76	-0.8
4,254,036	+		LU632_RS22255	0.76	-0.6
4,254,080	+				-1.6
4,254,080	+				+0.3
4,254,081	-				+0.6
4,254,116	+				+2.6
4,254,116	+				-0.0
4,254,116	+				-0.9
4,254,167	+				+2.1
4,254,168	-				+0.1
4,254,168	-				+0.9
4,254,188	+				-1.8
4,254,189	-				-1.6
4,254,193	-				+0.6
4,254,219	-				-2.0
4,254,231	+				-0.3
4,254,337	-				-0.1
4,254,399	+				-0.1
4,254,399	+				+0.7
4,254,423	+				-0.3
4,254,424	-				-0.9
4,254,424	-				+0.7
4,254,566	+				-0.3
4,254,580	-				+0.1
4,254,598	+				+0.2
4,254,630	+				-0.1
4,254,631	-				-0.9
4,254,631	-				-0.6
4,254,686	+				-0.4
4,254,706	+		LU632_RS22260	0.16	-0.4
4,254,707	-		LU632_RS22260	0.16	-0.9