Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21755

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,158,666	-	rnr	LU632_RS21750	0.83	+3.0
4,158,689	-	rnr	LU632_RS21750	0.84	+3.7
4,158,719	-	rnr	LU632_RS21750	0.85	-0.9
4,158,762	+	rnr	LU632_RS21750	0.87	-0.6
4,159,087	+				-0.6
4,159,087	+				+0.9
4,159,088	-				+1.3
4,159,156	+				+1.1
4,159,157	-				+0.7
4,159,267	+				+0.5
4,159,268	-				+0.2
4,159,279	+				-0.1
4,159,279	+				+1.7
4,159,279	+				+0.1
4,159,280	-				+0.6
4,159,280	-				-2.5
4,159,373	+				-1.5
4,159,378	+				+0.7
4,159,378	+				+0.1
4,159,379	-				-0.0
4,159,410	-				-1.0
4,159,438	+				-0.9
4,159,492	+				-1.3
4,159,495	-				-0.4
4,159,495	-				-0.6
4,159,533	+				-0.3
4,159,537	+				+2.7
4,159,537	+				+0.9
4,159,679	-				-2.1
4,159,720	+				-1.3
4,159,721	-				-3.6
4,159,722	+				-4.5
4,159,800	+		LU632_RS21755	0.14	-1.6
4,159,801	-		LU632_RS21755	0.14	-0.9
4,159,814	-		LU632_RS21755	0.15	-2.4
4,159,951	+		LU632_RS21755	0.26	-3.6
4,160,110	-		LU632_RS21755	0.38	-3.5
4,160,129	+		LU632_RS21755	0.39	-3.7
4,160,129	+		LU632_RS21755	0.39	-3.1
4,160,129	+		LU632_RS21755	0.39	-1.9
4,160,129	+		LU632_RS21755	0.39	-3.4
4,160,130	-		LU632_RS21755	0.39	-1.9
4,160,130	-		LU632_RS21755	0.39	-6.2
4,160,130	-		LU632_RS21755	0.39	-0.6
4,160,131	+		LU632_RS21755	0.39	-2.1
4,160,131	+		LU632_RS21755	0.39	-1.5
4,160,131	+		LU632_RS21755	0.39	-1.3
4,160,131	+		LU632_RS21755	0.39	-4.1
4,160,131	+		LU632_RS21755	0.39	-3.4
4,160,132	-		LU632_RS21755	0.39	-4.7
4,160,132	-		LU632_RS21755	0.39	-0.6
4,160,132	-		LU632_RS21755	0.39	-2.1
4,160,132	-		LU632_RS21755	0.39	-4.3
4,160,134	-		LU632_RS21755	0.40	-4.7
4,160,134	-		LU632_RS21755	0.40	-3.5
4,160,134	-		LU632_RS21755	0.40	-5.3
4,160,134	-		LU632_RS21755	0.40	-0.6
4,160,134	-		LU632_RS21755	0.40	-3.7
4,160,134	-		LU632_RS21755	0.40	-1.3
4,160,186	-		LU632_RS21755	0.44	-4.0
4,160,188	+		LU632_RS21755	0.44	-3.4
4,160,191	+		LU632_RS21755	0.44	-1.5
4,160,191	+		LU632_RS21755	0.44	-2.0
4,160,192	-		LU632_RS21755	0.44	-5.5
4,160,192	-		LU632_RS21755	0.44	-5.1
4,160,206	-		LU632_RS21755	0.45	-3.2
4,160,212	-		LU632_RS21755	0.46	-1.3
4,160,317	+		LU632_RS21755	0.54	-3.0
4,160,368	-		LU632_RS21755	0.58	-2.0
4,160,636	+		LU632_RS21755	0.78	-1.5
4,160,753	+		LU632_RS21755	0.87	-4.2
4,160,753	+		LU632_RS21755	0.87	-1.3
4,160,753	+		LU632_RS21755	0.87	-4.8
4,160,754	-		LU632_RS21755	0.87	-1.9
4,160,754	-		LU632_RS21755	0.87	-3.4
4,160,830	-				-5.2
4,160,952	+				-1.9
4,160,988	+				+0.1
4,161,074	+		LU632_RS21760	0.15	-1.0
4,161,074	+		LU632_RS21760	0.15	-1.3
4,161,074	+		LU632_RS21760	0.15	-0.2
4,161,075	-		LU632_RS21760	0.16	-1.3
4,161,075	-		LU632_RS21760	0.16	-0.5
4,161,075	-		LU632_RS21760	0.16	-0.4
4,161,082	-		LU632_RS21760	0.19	-0.9
4,161,214	+		LU632_RS21760	0.84	+1.4
4,161,214	+		LU632_RS21760	0.84	+1.3
4,161,232	+				-0.3
4,161,232	+				-2.2
4,161,234	+				-0.5
4,161,234	+				-0.6
4,161,234	+				-1.0
4,161,234	+				+1.2
4,161,234	+				-0.8
4,161,235	-				-0.8
4,161,235	-				-1.4
4,161,444	-				-2.8
4,161,477	+				+0.7
4,161,477	+				+0.3
4,161,636	+				+1.7
4,161,672	+				+1.2