Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21460

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,105,064	+	csrD	LU632_RS21455	0.66	+1.3
4,105,064	+	csrD	LU632_RS21455	0.66	-1.1
4,105,064	+	csrD	LU632_RS21455	0.66	-1.1
4,105,065	-	csrD	LU632_RS21455	0.66	-2.4
4,105,065	-	csrD	LU632_RS21455	0.66	-0.4
4,105,070	-	csrD	LU632_RS21455	0.66	-1.3
4,105,070	-	csrD	LU632_RS21455	0.66	+0.7
4,105,116	-	csrD	LU632_RS21455	0.69	-0.4
4,105,157	+	csrD	LU632_RS21455	0.71	-1.4
4,105,175	-	csrD	LU632_RS21455	0.72	+0.1
4,105,177	+	csrD	LU632_RS21455	0.72	-0.3
4,105,178	-	csrD	LU632_RS21455	0.72	-2.1
4,105,247	+	csrD	LU632_RS21455	0.75	-1.8
4,105,247	+	csrD	LU632_RS21455	0.75	-1.0
4,105,247	+	csrD	LU632_RS21455	0.75	-2.5
4,105,247	+	csrD	LU632_RS21455	0.75	+0.3
4,105,248	-	csrD	LU632_RS21455	0.75	-1.3
4,105,306	+	csrD	LU632_RS21455	0.78	-0.0
4,105,315	+	csrD	LU632_RS21455	0.79	-1.2
4,105,315	+	csrD	LU632_RS21455	0.79	-0.9
4,105,316	-	csrD	LU632_RS21455	0.79	+0.2
4,105,398	-	csrD	LU632_RS21455	0.83	-0.3
4,105,402	+	csrD	LU632_RS21455	0.83	-1.5
4,105,402	+	csrD	LU632_RS21455	0.83	-0.8
4,105,402	+	csrD	LU632_RS21455	0.83	-0.3
4,105,402	+	csrD	LU632_RS21455	0.83	-3.1
4,105,402	+	csrD	LU632_RS21455	0.83	+2.2
4,105,403	-	csrD	LU632_RS21455	0.83	+3.7
4,105,403	-	csrD	LU632_RS21455	0.83	+0.2
4,105,403	-	csrD	LU632_RS21455	0.83	+0.9
4,105,403	-	csrD	LU632_RS21455	0.83	-2.4
4,105,403	-	csrD	LU632_RS21455	0.83	-1.9
4,105,403	-	csrD	LU632_RS21455	0.83	+0.2
4,105,403	-	csrD	LU632_RS21455	0.83	-0.2
4,105,408	+	csrD	LU632_RS21455	0.83	+0.4
4,105,408	+	csrD	LU632_RS21455	0.83	-0.7
4,105,419	+	csrD	LU632_RS21455	0.84	-2.3
4,105,481	-	csrD	LU632_RS21455	0.87	+1.6
4,105,586	-				-1.5
4,105,605	-				-0.3
4,105,646	+				-0.9
4,105,646	+				+0.2
4,105,646	+				-0.7
4,105,647	-				-1.1
4,105,647	-				-0.5
4,105,649	+				+1.5
4,105,650	-				-1.5
4,105,671	-				+0.8
4,105,721	+				-0.9
4,105,783	+				-1.0
4,105,809	+				-0.9
4,105,809	+				+0.0
4,105,814	+				-2.1
4,105,870	+				+0.6
4,105,892	+				+0.0
4,105,892	+				+1.0
4,105,892	+				+2.4
4,105,893	-				+1.7
4,106,022	+		LU632_RS21460	0.10	+1.8
4,106,023	-		LU632_RS21460	0.10	+1.3
4,106,023	-		LU632_RS21460	0.10	-0.7
4,106,023	-		LU632_RS21460	0.10	-0.4
4,106,042	+		LU632_RS21460	0.12	+2.7
4,106,042	+		LU632_RS21460	0.12	+1.4
4,106,081	-		LU632_RS21460	0.16	+0.1
4,106,177	-		LU632_RS21460	0.26	-0.1
4,106,291	-		LU632_RS21460	0.38	-2.1
4,106,319	+		LU632_RS21460	0.41	+1.3
4,106,500	-		LU632_RS21460	0.59	+1.1
4,106,504	+		LU632_RS21460	0.60	-3.9
4,106,504	+		LU632_RS21460	0.60	+1.0
4,106,504	+		LU632_RS21460	0.60	-2.0
4,106,504	+		LU632_RS21460	0.60	-1.1
4,106,505	-		LU632_RS21460	0.60	-2.3
4,106,505	-		LU632_RS21460	0.60	-0.6
4,106,567	+		LU632_RS21460	0.66	-2.3
4,106,567	+		LU632_RS21460	0.66	-0.6
4,106,568	-		LU632_RS21460	0.66	-1.3
4,106,568	-		LU632_RS21460	0.66	-1.3
4,106,571	+		LU632_RS21460	0.67	+0.5
4,106,571	+		LU632_RS21460	0.67	-0.3
4,106,572	-		LU632_RS21460	0.67	+0.3
4,106,572	-		LU632_RS21460	0.67	-0.6
4,106,572	-		LU632_RS21460	0.67	-1.6
4,106,572	-		LU632_RS21460	0.67	+0.1
4,106,572	-		LU632_RS21460	0.67	-0.2
4,106,572	-		LU632_RS21460	0.67	-0.4
4,106,572	-		LU632_RS21460	0.67	+2.2
4,106,685	+		LU632_RS21460	0.78	+0.6
4,106,686	-		LU632_RS21460	0.78	+0.7
4,106,719	+		LU632_RS21460	0.82	-0.4
4,106,720	-		LU632_RS21460	0.82	+1.1
4,106,747	+		LU632_RS21460	0.85	+1.0
4,106,751	+		LU632_RS21460	0.85	+1.3
4,106,751	+		LU632_RS21460	0.85	-1.7
4,106,752	-		LU632_RS21460	0.85	+0.7
4,106,752	-		LU632_RS21460	0.85	+0.1
4,106,791	+		LU632_RS21460	0.89	-0.4
4,106,853	+				+1.5
4,107,012	+				-0.9
4,107,081	+				+1.7
4,107,214	-	msrP	LU632_RS21465	0.18	-1.5
4,107,245	-	msrP	LU632_RS21465	0.21	-0.4
4,107,276	+	msrP	LU632_RS21465	0.24	+0.4
4,107,277	-	msrP	LU632_RS21465	0.24	-0.3
4,107,290	-	msrP	LU632_RS21465	0.26	-1.3
4,107,407	+	msrP	LU632_RS21465	0.37	-0.5
4,107,407	+	msrP	LU632_RS21465	0.37	-0.2
4,107,408	-	msrP	LU632_RS21465	0.37	-0.1
4,107,408	-	msrP	LU632_RS21465	0.37	-0.5
4,107,411	+	msrP	LU632_RS21465	0.38	-1.6
4,107,411	+	msrP	LU632_RS21465	0.38	+0.3
4,107,411	+	msrP	LU632_RS21465	0.38	-1.2
4,107,412	-	msrP	LU632_RS21465	0.38	-1.5
4,107,412	-	msrP	LU632_RS21465	0.38	-0.3
4,107,455	-	msrP	LU632_RS21465	0.42	-1.1
4,107,455	-	msrP	LU632_RS21465	0.42	+0.4
4,107,640	+	msrP	LU632_RS21465	0.60	+1.1
4,107,640	+	msrP	LU632_RS21465	0.60	+1.3
4,107,641	-	msrP	LU632_RS21465	0.61	-0.7
4,107,708	+	msrP	LU632_RS21465	0.67	-0.8
4,107,708	+	msrP	LU632_RS21465	0.67	+0.6
4,107,709	-	msrP	LU632_RS21465	0.67	-1.3
4,107,780	+	msrP	LU632_RS21465	0.74	+1.7
4,107,781	-	msrP	LU632_RS21465	0.75	-0.3