Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mreC and mreB are separated by 68 nucleotides mreB and csrD are separated by 324 nucleotides
LU632_RS21445: mreC - rod shape-determining protein MreC, at 4,101,306 to 4,102,343
mreC
LU632_RS21450: mreB - rod shape-determining protein MreB, at 4,102,412 to 4,103,455
mreB
LU632_RS21455: csrD - RNase E specificity factor CsrD, at 4,103,780 to 4,105,729
csrD
Position (kb) 4102
4103
4104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4101.424 kb on - strand, within mreC at 4101.424 kb on - strand, within mreC at 4103.568 kb on + strand at 4103.660 kb on + strand at 4103.660 kb on + strand at 4103.661 kb on - strand at 4103.661 kb on - strand at 4103.661 kb on - strand at 4103.665 kb on + strand at 4103.666 kb on - strand at 4103.666 kb on - strand at 4103.688 kb on - strand at 4103.755 kb on - strand at 4103.791 kb on - strand at 4103.844 kb on + strand at 4103.844 kb on + strand at 4103.845 kb on - strand at 4103.936 kb on - strand at 4103.999 kb on - strand, within csrD at 4104.022 kb on + strand, within csrD at 4104.022 kb on + strand, within csrD at 4104.049 kb on + strand, within csrD at 4104.050 kb on - strand, within csrD at 4104.051 kb on + strand, within csrD at 4104.051 kb on + strand, within csrD at 4104.052 kb on - strand, within csrD at 4104.052 kb on - strand, within csrD at 4104.145 kb on + strand, within csrD at 4104.145 kb on + strand, within csrD at 4104.145 kb on + strand, within csrD at 4104.146 kb on - strand, within csrD at 4104.146 kb on - strand, within csrD at 4104.146 kb on - strand, within csrD at 4104.155 kb on + strand, within csrD at 4104.156 kb on - strand, within csrD at 4104.156 kb on - strand, within csrD at 4104.180 kb on - strand, within csrD at 4104.207 kb on + strand, within csrD at 4104.208 kb on - strand, within csrD at 4104.216 kb on - strand, within csrD at 4104.221 kb on - strand, within csrD at 4104.330 kb on - strand, within csrD at 4104.330 kb on - strand, within csrD at 4104.330 kb on - strand, within csrD at 4104.342 kb on + strand, within csrD at 4104.342 kb on + strand, within csrD at 4104.343 kb on - strand, within csrD at 4104.427 kb on + strand, within csrD at 4104.428 kb on - strand, within csrD
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 4,101,424 - mreC LU632_RS21445 0.11 -1.7 4,101,424 - mreC LU632_RS21445 0.11 -2.5 4,103,568 + -2.2 4,103,660 + -0.8 4,103,660 + -2.8 4,103,661 - -1.2 4,103,661 - +0.2 4,103,661 - +0.1 4,103,665 + -2.4 4,103,666 - +0.5 4,103,666 - -0.1 4,103,688 - -0.1 4,103,755 - -1.1 4,103,791 - +0.5 4,103,844 + -0.6 4,103,844 + -0.3 4,103,845 - -0.2 4,103,936 - -0.1 4,103,999 - csrD LU632_RS21455 0.11 +0.4 4,104,022 + csrD LU632_RS21455 0.12 +1.3 4,104,022 + csrD LU632_RS21455 0.12 -1.1 4,104,049 + csrD LU632_RS21455 0.14 -0.4 4,104,050 - csrD LU632_RS21455 0.14 +0.6 4,104,051 + csrD LU632_RS21455 0.14 +0.2 4,104,051 + csrD LU632_RS21455 0.14 -3.1 4,104,052 - csrD LU632_RS21455 0.14 -0.7 4,104,052 - csrD LU632_RS21455 0.14 -1.3 4,104,145 + csrD LU632_RS21455 0.19 +0.2 4,104,145 + csrD LU632_RS21455 0.19 -0.3 4,104,145 + csrD LU632_RS21455 0.19 +0.1 4,104,146 - csrD LU632_RS21455 0.19 -0.6 4,104,146 - csrD LU632_RS21455 0.19 -1.7 4,104,146 - csrD LU632_RS21455 0.19 +0.7 4,104,155 + csrD LU632_RS21455 0.19 +3.7 4,104,156 - csrD LU632_RS21455 0.19 +2.1 4,104,156 - csrD LU632_RS21455 0.19 +2.7 4,104,180 - csrD LU632_RS21455 0.21 +0.9 4,104,207 + csrD LU632_RS21455 0.22 +0.3 4,104,208 - csrD LU632_RS21455 0.22 -1.9 4,104,216 - csrD LU632_RS21455 0.22 +0.8 4,104,221 - csrD LU632_RS21455 0.23 -0.5 4,104,330 - csrD LU632_RS21455 0.28 +0.2 4,104,330 - csrD LU632_RS21455 0.28 -0.2 4,104,330 - csrD LU632_RS21455 0.28 +0.1 4,104,342 + csrD LU632_RS21455 0.29 +0.4 4,104,342 + csrD LU632_RS21455 0.29 +0.8 4,104,343 - csrD LU632_RS21455 0.29 -0.1 4,104,427 + csrD LU632_RS21455 0.33 +0.7 4,104,428 - csrD LU632_RS21455 0.33 -0.3
Or see this region's nucleotide sequence