Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21420

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,092,398	+				+0.5
4,092,402	+				-1.7
4,092,413	-				+1.4
4,092,492	+				+1.0
4,092,495	+				-0.2
4,092,496	-				-0.7
4,092,496	-				+0.6
4,092,515	+				-1.1
4,092,522	-				+0.7
4,092,581	+	aaeR	LU632_RS21415	0.15	+0.7
4,092,585	+	aaeR	LU632_RS21415	0.16	+0.3
4,092,591	+	aaeR	LU632_RS21415	0.17	+0.4
4,092,595	-	aaeR	LU632_RS21415	0.17	+0.4
4,092,595	-	aaeR	LU632_RS21415	0.17	-0.0
4,092,595	-	aaeR	LU632_RS21415	0.17	-0.6
4,092,699	+	aaeR	LU632_RS21415	0.28	-1.3
4,092,702	+	aaeR	LU632_RS21415	0.29	-1.0
4,092,860	+	aaeR	LU632_RS21415	0.46	+1.3
4,092,860	+	aaeR	LU632_RS21415	0.46	-2.0
4,092,861	-	aaeR	LU632_RS21415	0.46	+1.2
4,092,861	-	aaeR	LU632_RS21415	0.46	+2.5
4,092,890	-	aaeR	LU632_RS21415	0.49	-2.1
4,092,899	-	aaeR	LU632_RS21415	0.50	-0.1
4,092,950	-	aaeR	LU632_RS21415	0.56	+0.4
4,093,098	+	aaeR	LU632_RS21415	0.72	+1.7
4,093,198	-	aaeR	LU632_RS21415	0.83	-0.3
4,093,242	-	aaeR	LU632_RS21415	0.87	-0.6
4,093,251	-	aaeR	LU632_RS21415	0.88	-3.0
4,093,251	-	aaeR	LU632_RS21415	0.88	+2.1
4,093,281	+				-0.0
4,093,282	-				+2.0
4,093,294	+				-1.1
4,093,294	+				-0.5
4,093,295	-				-1.5
4,093,295	-				+2.0
4,093,298	+				-0.5
4,093,298	+				-0.2
4,093,298	+				+0.7
4,093,310	+				+3.0
4,093,315	-				-0.5
4,093,335	-				-1.3
4,093,533	+				-0.5
4,093,603	-	tldD	LU632_RS21420	0.15	+0.7
4,093,604	+	tldD	LU632_RS21420	0.15	-1.1
4,093,604	+	tldD	LU632_RS21420	0.15	-1.6
4,093,604	+	tldD	LU632_RS21420	0.15	-0.3
4,093,605	-	tldD	LU632_RS21420	0.15	+0.2
4,093,691	-	tldD	LU632_RS21420	0.21	+0.7
4,093,734	+	tldD	LU632_RS21420	0.24	-0.9
4,093,734	+	tldD	LU632_RS21420	0.24	-0.4
4,093,734	+	tldD	LU632_RS21420	0.24	-0.9
4,093,735	-	tldD	LU632_RS21420	0.24	-0.1
4,093,735	-	tldD	LU632_RS21420	0.24	-1.5
4,093,736	+	tldD	LU632_RS21420	0.24	-0.1
4,093,736	+	tldD	LU632_RS21420	0.24	-0.5
4,093,736	+	tldD	LU632_RS21420	0.24	-1.4
4,093,736	+	tldD	LU632_RS21420	0.24	+1.7
4,093,736	+	tldD	LU632_RS21420	0.24	-0.0
4,093,736	+	tldD	LU632_RS21420	0.24	-0.3
4,093,736	+	tldD	LU632_RS21420	0.24	+0.4
4,093,737	-	tldD	LU632_RS21420	0.24	-1.4
4,093,737	-	tldD	LU632_RS21420	0.24	+1.9
4,093,737	-	tldD	LU632_RS21420	0.24	-0.5
4,093,772	+	tldD	LU632_RS21420	0.26	+1.7
4,093,772	+	tldD	LU632_RS21420	0.26	-0.8
4,093,871	-	tldD	LU632_RS21420	0.33	-1.1
4,093,878	-	tldD	LU632_RS21420	0.34	-1.1
4,094,140	-	tldD	LU632_RS21420	0.52	+0.3
4,094,349	-	tldD	LU632_RS21420	0.66	+0.8
4,094,459	-	tldD	LU632_RS21420	0.74	-1.4
4,094,508	+	tldD	LU632_RS21420	0.77	-0.1
4,094,650	+	tldD	LU632_RS21420	0.87	+0.5
4,094,650	+	tldD	LU632_RS21420	0.87	-2.5
4,094,650	+	tldD	LU632_RS21420	0.87	-0.3
4,094,650	+	tldD	LU632_RS21420	0.87	+0.3
4,094,650	+	tldD	LU632_RS21420	0.87	-0.3
4,094,651	-	tldD	LU632_RS21420	0.87	+0.1
4,094,651	-	tldD	LU632_RS21420	0.87	-1.7
4,094,651	-	tldD	LU632_RS21420	0.87	+0.2
4,094,651	-	tldD	LU632_RS21420	0.87	-2.1
4,094,651	-	tldD	LU632_RS21420	0.87	+0.1
4,094,651	-	tldD	LU632_RS21420	0.87	+2.2
4,094,652	+	tldD	LU632_RS21420	0.87	-0.6
4,094,752	+				-1.3
4,094,753	-				-1.6
4,094,787	+				-2.1
4,094,790	-				-0.7
4,094,791	-				+0.2
4,094,818	+				-0.1
4,094,837	+				-0.7
4,094,837	+				+0.1
4,094,838	-				-2.5
4,094,886	-				+0.4
4,094,990	+				-1.4
4,094,990	+				-0.8
4,094,991	-				+0.9
4,094,991	-				-0.1
4,094,991	-				-1.9
4,094,991	-				-0.1
4,095,137	+				-0.1
4,095,137	+				+0.1
4,095,137	+				+1.7
4,095,268	-				+0.7
4,095,269	-				-0.9
4,095,467	-	yhdP	LU632_RS21425	0.14	-1.4
4,095,476	+	yhdP	LU632_RS21425	0.15	-1.3
4,095,476	+	yhdP	LU632_RS21425	0.15	-1.6
4,095,477	-	yhdP	LU632_RS21425	0.15	+3.3
4,095,656	+	yhdP	LU632_RS21425	0.19	+1.2
4,095,657	-	yhdP	LU632_RS21425	0.19	-1.1
4,095,768	-	yhdP	LU632_RS21425	0.22	-0.7
4,095,768	-	yhdP	LU632_RS21425	0.22	+0.2
4,095,768	-	yhdP	LU632_RS21425	0.22	-0.8
4,095,768	-	yhdP	LU632_RS21425	0.22	-1.6
4,095,780	-	yhdP	LU632_RS21425	0.23	-0.2
4,095,791	+	yhdP	LU632_RS21425	0.23	-1.1
4,095,820	+	yhdP	LU632_RS21425	0.24	-1.8
4,095,821	-	yhdP	LU632_RS21425	0.24	-0.2
4,095,829	+	yhdP	LU632_RS21425	0.24	-1.1
4,095,829	+	yhdP	LU632_RS21425	0.24	-1.6
4,095,830	-	yhdP	LU632_RS21425	0.24	-0.1
4,095,833	+	yhdP	LU632_RS21425	0.24	-0.3