Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21405

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,090,075	-	aaeB	LU632_RS21400	0.51	-1.5
4,090,088	-	aaeB	LU632_RS21400	0.52	-1.2
4,090,088	-	aaeB	LU632_RS21400	0.52	+0.7
4,090,131	-	aaeB	LU632_RS21400	0.54	-0.9
4,090,181	+	aaeB	LU632_RS21400	0.57	+2.9
4,090,239	+	aaeB	LU632_RS21400	0.60	+0.5
4,090,240	-	aaeB	LU632_RS21400	0.60	-2.1
4,090,241	+	aaeB	LU632_RS21400	0.60	+0.6
4,090,241	+	aaeB	LU632_RS21400	0.60	+1.6
4,090,241	+	aaeB	LU632_RS21400	0.60	+0.8
4,090,241	+	aaeB	LU632_RS21400	0.60	+0.2
4,090,242	-	aaeB	LU632_RS21400	0.60	-1.6
4,090,242	-	aaeB	LU632_RS21400	0.60	-0.3
4,090,242	-	aaeB	LU632_RS21400	0.60	+1.8
4,090,243	+	aaeB	LU632_RS21400	0.60	+0.1
4,090,243	+	aaeB	LU632_RS21400	0.60	+2.3
4,090,244	-	aaeB	LU632_RS21400	0.60	-0.1
4,090,244	-	aaeB	LU632_RS21400	0.60	-1.4
4,090,270	+	aaeB	LU632_RS21400	0.61	+0.2
4,090,365	+	aaeB	LU632_RS21400	0.66	-1.1
4,090,366	-	aaeB	LU632_RS21400	0.66	-0.8
4,090,366	-	aaeB	LU632_RS21400	0.66	+0.7
4,090,366	-	aaeB	LU632_RS21400	0.66	-1.4
4,090,425	-	aaeB	LU632_RS21400	0.69	+0.7
4,090,474	+	aaeB	LU632_RS21400	0.72	+0.2
4,090,577	+	aaeB	LU632_RS21400	0.77	-0.9
4,090,652	+	aaeB	LU632_RS21400	0.81	+0.4
4,090,808	+	aaeB	LU632_RS21400	0.89	-1.9
4,090,808	+	aaeB	LU632_RS21400	0.89	+1.5
4,090,829	+	aaeB	LU632_RS21400	0.90	-0.7
4,090,832	+				-0.8
4,090,832	+				+0.2
4,090,910	+				-0.4
4,090,911	-				+0.5
4,091,018	-				+1.9
4,091,018	-				-2.6
4,091,065	+				-0.9
4,091,066	-				-1.1
4,091,173	-	aaeA	LU632_RS21405	0.15	-0.1
4,091,241	+	aaeA	LU632_RS21405	0.22	+1.9
4,091,292	+	aaeA	LU632_RS21405	0.28	-0.2
4,091,297	+	aaeA	LU632_RS21405	0.28	-1.1
4,091,298	-	aaeA	LU632_RS21405	0.29	+0.5
4,091,378	+	aaeA	LU632_RS21405	0.37	+0.7
4,091,378	+	aaeA	LU632_RS21405	0.37	-0.1
4,091,378	+	aaeA	LU632_RS21405	0.37	-1.5
4,091,379	-	aaeA	LU632_RS21405	0.37	-0.3
4,091,379	-	aaeA	LU632_RS21405	0.37	+1.2
4,091,391	-	aaeA	LU632_RS21405	0.38	-0.1
4,091,608	+	aaeA	LU632_RS21405	0.62	-0.8
4,091,610	+	aaeA	LU632_RS21405	0.62	-1.6
4,091,678	+	aaeA	LU632_RS21405	0.69	-1.6
4,091,678	+	aaeA	LU632_RS21405	0.69	-1.0
4,091,871	-				-0.3
4,091,950	-				+0.7
4,092,055	-		LU632_RS21410	0.41	+1.7
4,092,150	-		LU632_RS21410	0.87	+0.6
4,092,250	+				-1.1
4,092,251	-				+0.4
4,092,308	+				-0.4
4,092,308	+				+0.8
4,092,317	-				-0.1
4,092,319	+				+2.0
4,092,319	+				+1.0
4,092,319	+				+0.6
4,092,319	+				+0.7
4,092,320	-				-2.4
4,092,320	-				+0.5
4,092,352	+				+0.9
4,092,352	+				-0.3
4,092,398	+				+0.5
4,092,402	+				-1.7
4,092,413	-				+1.4
4,092,492	+				+1.0
4,092,495	+				-0.2
4,092,496	-				-0.7
4,092,496	-				+0.6
4,092,515	+				-1.1
4,092,522	-				+0.7
4,092,581	+	aaeR	LU632_RS21415	0.15	+0.7
4,092,585	+	aaeR	LU632_RS21415	0.16	+0.3
4,092,591	+	aaeR	LU632_RS21415	0.17	+0.4
4,092,595	-	aaeR	LU632_RS21415	0.17	+0.4
4,092,595	-	aaeR	LU632_RS21415	0.17	-0.0
4,092,595	-	aaeR	LU632_RS21415	0.17	-0.6
4,092,699	+	aaeR	LU632_RS21415	0.28	-1.3
4,092,702	+	aaeR	LU632_RS21415	0.29	-1.0
4,092,860	+	aaeR	LU632_RS21415	0.46	+1.3
4,092,860	+	aaeR	LU632_RS21415	0.46	-2.0
4,092,861	-	aaeR	LU632_RS21415	0.46	+1.2
4,092,861	-	aaeR	LU632_RS21415	0.46	+2.5
4,092,890	-	aaeR	LU632_RS21415	0.49	-2.1
4,092,899	-	aaeR	LU632_RS21415	0.50	-0.1
4,092,950	-	aaeR	LU632_RS21415	0.56	+0.4