Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftsH and rlmE are separated by 55 nucleotides rlmE and yhbY are separated by 126 nucleotides yhbY and LU632_RS21120 are separated by 193 nucleotides
LU632_RS21105: ftsH - ATP-dependent zinc metalloprotease FtsH, at 4,034,567 to 4,036,498
ftsH
LU632_RS21110: rlmE - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 4,036,554 to 4,037,183
rlmE
LU632_RS21115: yhbY - ribosome assembly RNA-binding protein YhbY, at 4,037,310 to 4,037,603
yhbY
LU632_RS21120: LU632_RS21120 - tyrosine-type recombinase/integrase, at 4,037,797 to 4,038,777
_RS21120
Position (kb) 4036
4037
4038 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4036.723 kb on - strand, within rlmE at 4036.760 kb on - strand, within rlmE at 4036.803 kb on - strand, within rlmE at 4036.803 kb on - strand, within rlmE at 4036.803 kb on - strand, within rlmE at 4036.803 kb on - strand, within rlmE at 4036.822 kb on - strand, within rlmE at 4036.822 kb on - strand, within rlmE at 4036.822 kb on - strand, within rlmE at 4036.831 kb on - strand, within rlmE at 4036.853 kb on - strand, within rlmE at 4036.935 kb on - strand, within rlmE at 4036.961 kb on + strand, within rlmE at 4036.974 kb on - strand, within rlmE at 4036.978 kb on - strand, within rlmE at 4036.981 kb on + strand, within rlmE at 4036.981 kb on + strand, within rlmE at 4036.981 kb on + strand, within rlmE at 4036.982 kb on - strand, within rlmE at 4037.036 kb on + strand, within rlmE at 4037.119 kb on + strand, within rlmE at 4037.119 kb on + strand, within rlmE at 4037.119 kb on + strand, within rlmE at 4037.120 kb on - strand, within rlmE at 4037.183 kb on + strand at 4037.184 kb on - strand at 4037.196 kb on + strand at 4037.196 kb on + strand at 4037.197 kb on - strand at 4037.208 kb on + strand at 4037.208 kb on - strand at 4037.296 kb on + strand at 4037.296 kb on + strand at 4037.451 kb on - strand, within yhbY at 4037.457 kb on - strand, within yhbY at 4037.528 kb on + strand, within yhbY at 4037.528 kb on + strand, within yhbY at 4037.529 kb on - strand, within yhbY at 4037.560 kb on + strand, within yhbY at 4037.560 kb on + strand, within yhbY at 4037.561 kb on - strand, within yhbY at 4037.562 kb on + strand, within yhbY at 4037.562 kb on + strand, within yhbY at 4037.615 kb on + strand at 4037.649 kb on - strand at 4037.649 kb on - strand at 4037.686 kb on - strand at 4037.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 4,036,723 - rlmE LU632_RS21110 0.27 -1.0 4,036,760 - rlmE LU632_RS21110 0.33 +0.2 4,036,803 - rlmE LU632_RS21110 0.40 +0.8 4,036,803 - rlmE LU632_RS21110 0.40 -1.3 4,036,803 - rlmE LU632_RS21110 0.40 -0.7 4,036,803 - rlmE LU632_RS21110 0.40 +1.1 4,036,822 - rlmE LU632_RS21110 0.43 +1.3 4,036,822 - rlmE LU632_RS21110 0.43 -1.5 4,036,822 - rlmE LU632_RS21110 0.43 -0.1 4,036,831 - rlmE LU632_RS21110 0.44 +0.2 4,036,853 - rlmE LU632_RS21110 0.47 -0.3 4,036,935 - rlmE LU632_RS21110 0.60 -0.1 4,036,961 + rlmE LU632_RS21110 0.65 -0.6 4,036,974 - rlmE LU632_RS21110 0.67 -0.8 4,036,978 - rlmE LU632_RS21110 0.67 +0.0 4,036,981 + rlmE LU632_RS21110 0.68 +0.1 4,036,981 + rlmE LU632_RS21110 0.68 -0.6 4,036,981 + rlmE LU632_RS21110 0.68 +2.5 4,036,982 - rlmE LU632_RS21110 0.68 -0.6 4,037,036 + rlmE LU632_RS21110 0.77 +2.4 4,037,119 + rlmE LU632_RS21110 0.90 -1.1 4,037,119 + rlmE LU632_RS21110 0.90 -0.6 4,037,119 + rlmE LU632_RS21110 0.90 -0.6 4,037,120 - rlmE LU632_RS21110 0.90 -1.8 4,037,183 + +1.3 4,037,184 - +1.1 4,037,196 + -0.1 4,037,196 + +0.1 4,037,197 - +1.0 4,037,208 + -0.1 4,037,208 - +0.9 4,037,296 + +2.3 4,037,296 + +3.1 4,037,451 - yhbY LU632_RS21115 0.48 -0.2 4,037,457 - yhbY LU632_RS21115 0.50 +0.6 4,037,528 + yhbY LU632_RS21115 0.74 +0.1 4,037,528 + yhbY LU632_RS21115 0.74 -0.4 4,037,529 - yhbY LU632_RS21115 0.74 +0.7 4,037,560 + yhbY LU632_RS21115 0.85 -0.3 4,037,560 + yhbY LU632_RS21115 0.85 -1.0 4,037,561 - yhbY LU632_RS21115 0.85 +1.2 4,037,562 + yhbY LU632_RS21115 0.86 -0.4 4,037,562 + yhbY LU632_RS21115 0.86 +0.7 4,037,615 + -1.0 4,037,649 - +1.3 4,037,649 - -2.3 4,037,686 - -0.2 4,037,686 - +0.6
Or see this region's nucleotide sequence