Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21010

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
4,013,635	-				+1.7
4,013,718	+		LU632_RS21005	0.16	+0.2
4,013,760	-		LU632_RS21005	0.20	-0.3
4,014,122	+		LU632_RS21005	0.56	+0.1
4,014,122	+		LU632_RS21005	0.56	-2.0
4,014,122	+		LU632_RS21005	0.56	-0.9
4,014,123	-		LU632_RS21005	0.56	+1.5
4,014,123	-		LU632_RS21005	0.56	+1.9
4,014,123	-		LU632_RS21005	0.56	+0.7
4,014,123	-		LU632_RS21005	0.56	-0.3
4,014,125	+		LU632_RS21005	0.57	-0.6
4,014,125	+		LU632_RS21005	0.57	+1.5
4,014,126	-		LU632_RS21005	0.57	+1.6
4,014,126	-		LU632_RS21005	0.57	+1.3
4,014,126	-		LU632_RS21005	0.57	+1.7
4,014,267	+		LU632_RS21005	0.71	+0.8
4,014,267	+		LU632_RS21005	0.71	+0.1
4,014,268	-		LU632_RS21005	0.71	-0.9
4,014,268	-		LU632_RS21005	0.71	+0.2
4,014,268	-		LU632_RS21005	0.71	+1.7
4,014,321	-		LU632_RS21005	0.76	+0.4
4,014,403	+		LU632_RS21005	0.84	-1.8
4,014,403	+		LU632_RS21005	0.84	-2.2
4,014,403	+		LU632_RS21005	0.84	-1.5
4,014,404	-		LU632_RS21005	0.85	+0.3
4,014,404	-		LU632_RS21005	0.85	-1.8
4,014,446	+		LU632_RS21005	0.89	+1.7
4,014,469	-				+1.5
4,014,505	+				-0.6
4,014,505	+				+2.0
4,014,538	-				-1.6
4,014,573	-				+1.4
4,014,573	-				+2.7
4,014,615	+				-1.5
4,014,616	-				+2.4
4,014,658	+		LU632_RS21010	0.10	+0.8
4,014,662	+		LU632_RS21010	0.11	-0.0
4,014,678	+		LU632_RS21010	0.13	-0.6
4,014,679	-		LU632_RS21010	0.13	-0.4
4,014,809	-		LU632_RS21010	0.27	-1.1
4,014,921	-		LU632_RS21010	0.40	-0.6
4,014,946	-		LU632_RS21010	0.43	+0.0
4,015,036	+		LU632_RS21010	0.53	-0.6
4,015,080	+		LU632_RS21010	0.57	-1.1
4,015,156	+		LU632_RS21010	0.66	-1.3
4,015,352	-		LU632_RS21010	0.88	+0.7
4,015,417	+				+1.2
4,015,418	-				-0.3
4,015,418	-				-1.1
4,015,471	-				+0.1
4,015,471	-				-0.2