Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20885

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,989,154	+				-0.8
3,989,154	+				-2.5
3,989,154	+				+0.7
3,989,154	+				+0.3
3,989,186	-				-1.1
3,989,198	-				+0.0
3,989,204	-				+0.3
3,989,212	-		LU632_RS20880	0.10	-0.4
3,989,212	-		LU632_RS20880	0.10	-1.9
3,989,379	+		LU632_RS20880	0.38	-0.1
3,989,380	-		LU632_RS20880	0.39	+1.5
3,989,380	-		LU632_RS20880	0.39	+0.1
3,989,531	-		LU632_RS20880	0.64	-2.0
3,989,546	-		LU632_RS20880	0.67	+0.0
3,989,546	-		LU632_RS20880	0.67	+1.6
3,989,546	-		LU632_RS20880	0.67	-0.0
3,989,549	+		LU632_RS20880	0.67	+0.1
3,989,549	+		LU632_RS20880	0.67	+0.3
3,989,550	-		LU632_RS20880	0.68	-0.6
3,989,671	+		LU632_RS20880	0.88	+3.3
3,989,751	+				-2.1
3,989,752	-				-2.1
3,989,809	-				-0.7
3,990,010	+				-1.6
3,990,013	+				+0.9
3,990,013	+				-2.0
3,990,013	+				+1.0
3,990,112	+				-2.4
3,990,196	+		LU632_RS20885	0.28	+2.7
3,990,196	+		LU632_RS20885	0.28	+0.3
3,990,197	-		LU632_RS20885	0.29	-0.3
3,990,350	+		LU632_RS20885	0.76	-0.3
3,990,394	+				+2.4
3,990,429	+				+0.6
3,990,429	+				+1.8
3,990,429	+				+0.6
3,990,429	+				+1.8
3,990,430	-				-0.9
3,990,430	-				-0.3
3,990,462	+				-0.3
3,990,666	-				+0.3
3,990,821	-	kup	LU632_RS20890	0.17	+2.1
3,990,821	-	kup	LU632_RS20890	0.17	-0.6
3,990,833	+	kup	LU632_RS20890	0.17	-0.9
3,990,842	+	kup	LU632_RS20890	0.18	-1.2
3,990,989	+	kup	LU632_RS20890	0.26	+0.7
3,990,990	-	kup	LU632_RS20890	0.26	-0.5
3,990,990	-	kup	LU632_RS20890	0.26	-1.8
3,991,063	-	kup	LU632_RS20890	0.30	+1.3
3,991,095	+	kup	LU632_RS20890	0.32	+1.8
3,991,095	+	kup	LU632_RS20890	0.32	+0.3
3,991,149	+	kup	LU632_RS20890	0.34	+1.1
3,991,149	+	kup	LU632_RS20890	0.34	-2.5
3,991,182	-	kup	LU632_RS20890	0.36	-0.6
3,991,317	-	kup	LU632_RS20890	0.43	+0.9
3,991,317	-	kup	LU632_RS20890	0.43	+2.7
3,991,363	+	kup	LU632_RS20890	0.46	+0.2
3,991,363	+	kup	LU632_RS20890	0.46	-0.1
3,991,363	+	kup	LU632_RS20890	0.46	-1.5
3,991,364	-	kup	LU632_RS20890	0.46	+0.3
3,991,391	+	kup	LU632_RS20890	0.47	+1.0