Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20560

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,913,746	-		LU632_RS20555	0.14	+0.1
3,914,126	+		LU632_RS20555	0.47	+1.1
3,914,128	+		LU632_RS20555	0.48	-1.6
3,914,197	+		LU632_RS20555	0.54	+0.1
3,914,198	-		LU632_RS20555	0.54	+0.1
3,914,198	-		LU632_RS20555	0.54	-0.5
3,914,200	-		LU632_RS20555	0.54	+1.3
3,914,232	-		LU632_RS20555	0.57	+0.1
3,914,264	-		LU632_RS20555	0.59	+0.7
3,914,329	-		LU632_RS20555	0.65	-1.6
3,914,368	+		LU632_RS20555	0.68	+0.7
3,914,586	+		LU632_RS20555	0.87	-0.3
3,914,644	+				-0.0
3,914,693	+				-0.6
3,914,706	+				-2.3
3,914,758	+				+1.7
3,914,758	+				+2.7
3,915,151	-		LU632_RS20560	0.78	+0.5
3,915,165	+		LU632_RS20560	0.80	+0.6
3,915,165	+		LU632_RS20560	0.80	-0.5
3,915,166	-		LU632_RS20560	0.80	-1.9
3,915,166	-		LU632_RS20560	0.80	+0.1
3,915,200	-		LU632_RS20560	0.87	+0.2
3,915,304	+				+0.8
3,915,318	-				-0.5
3,915,331	+				+0.1
3,915,410	+				-0.3
3,915,527	-				+0.5
3,915,840	-		LU632_RS20565	0.34	-1.8
3,915,873	+		LU632_RS20565	0.46	-0.6
3,915,940	+		LU632_RS20565	0.71	+0.4
3,915,940	+		LU632_RS20565	0.71	+0.7
3,915,941	-		LU632_RS20565	0.71	+1.6
3,915,944	+		LU632_RS20565	0.72	-1.2
3,916,048	+				-0.5
3,916,056	-				-1.1
3,916,144	+				-1.9
3,916,252	+				-0.6
3,916,252	+				+0.1
3,916,253	-				+0.7