Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20545

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,910,298	+				+1.2
3,910,299	-				-1.6
3,910,362	+				-1.4
3,910,363	-				+2.5
3,910,469	+	exbB	LU632_RS20540	0.21	+0.6
3,910,470	-	exbB	LU632_RS20540	0.21	-1.6
3,910,486	+	exbB	LU632_RS20540	0.23	-1.4
3,910,579	-	exbB	LU632_RS20540	0.36	+2.6
3,910,606	+	exbB	LU632_RS20540	0.39	-0.3
3,911,006	+				+0.2
3,911,006	+				-0.7
3,911,006	+				+0.5
3,911,007	-				+3.0
3,911,007	-				+0.4
3,911,207	+				+1.8
3,911,207	+				-0.5
3,911,447	-	metC	LU632_RS20545	0.13	-0.9
3,911,451	+	metC	LU632_RS20545	0.14	-1.4
3,911,451	+	metC	LU632_RS20545	0.14	-0.6
3,911,615	-	metC	LU632_RS20545	0.27	-1.3
3,911,650	+	metC	LU632_RS20545	0.30	-1.2
3,911,881	-	metC	LU632_RS20545	0.50	-0.9
3,911,891	+	metC	LU632_RS20545	0.50	-0.3
3,911,891	+	metC	LU632_RS20545	0.50	-2.0
3,911,891	+	metC	LU632_RS20545	0.50	-0.2
3,911,912	+	metC	LU632_RS20545	0.52	-1.9
3,911,912	+	metC	LU632_RS20545	0.52	-2.4
3,911,984	-	metC	LU632_RS20545	0.58	-3.2
3,911,997	+	metC	LU632_RS20545	0.59	-1.4
3,911,997	+	metC	LU632_RS20545	0.59	-2.2
3,911,998	-	metC	LU632_RS20545	0.59	-1.5
3,912,003	-	metC	LU632_RS20545	0.60	+0.1
3,912,033	+	metC	LU632_RS20545	0.62	-1.3
3,912,033	+	metC	LU632_RS20545	0.62	-0.8
3,912,033	+	metC	LU632_RS20545	0.62	-0.6
3,912,034	-	metC	LU632_RS20545	0.62	+0.1
3,912,034	-	metC	LU632_RS20545	0.62	-3.8
3,912,034	-	metC	LU632_RS20545	0.62	+0.1
3,912,068	-	metC	LU632_RS20545	0.65	-3.3
3,912,158	-	metC	LU632_RS20545	0.73	-1.7
3,912,288	-	metC	LU632_RS20545	0.83	-3.7
3,912,298	-	metC	LU632_RS20545	0.84	-3.5
3,912,476	-				-2.5
3,912,484	-				-0.3
3,912,509	+				+0.5
3,912,542	+				-0.9
3,912,655	+		LU632_RS20550	0.11	-0.6
3,912,655	+		LU632_RS20550	0.11	+0.1
3,912,656	-		LU632_RS20550	0.11	-0.9
3,912,656	-		LU632_RS20550	0.11	+1.0
3,912,657	+		LU632_RS20550	0.11	+0.9
3,912,657	+		LU632_RS20550	0.11	-0.2
3,912,658	-		LU632_RS20550	0.12	-0.1
3,912,658	-		LU632_RS20550	0.12	+0.3
3,912,674	+		LU632_RS20550	0.14	-0.1
3,912,675	-		LU632_RS20550	0.14	+0.1
3,912,675	-		LU632_RS20550	0.14	+0.6
3,912,709	+		LU632_RS20550	0.19	+0.6
3,912,797	+		LU632_RS20550	0.33	+0.1
3,912,866	+		LU632_RS20550	0.43	-0.9
3,913,125	-		LU632_RS20550	0.83	-1.2
3,913,174	+				-1.5
3,913,178	-				-0.6
3,913,237	-				+0.2
3,913,400	+				-0.5
3,913,437	-				+1.2