Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20140

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,834,541	+	hpt	LU632_RS20135	0.29	+0.6
3,834,541	+	hpt	LU632_RS20135	0.29	-3.0
3,834,542	-	hpt	LU632_RS20135	0.30	+1.4
3,834,542	-	hpt	LU632_RS20135	0.30	-1.4
3,834,542	-	hpt	LU632_RS20135	0.30	-0.2
3,834,545	+	hpt	LU632_RS20135	0.30	-1.1
3,834,578	+	hpt	LU632_RS20135	0.36	+0.6
3,834,601	+	hpt	LU632_RS20135	0.41	+0.1
3,834,602	-	hpt	LU632_RS20135	0.41	-1.5
3,834,700	+	hpt	LU632_RS20135	0.59	-1.3
3,834,701	-	hpt	LU632_RS20135	0.59	+0.1
3,834,701	-	hpt	LU632_RS20135	0.59	+0.4
3,834,727	+	hpt	LU632_RS20135	0.64	+2.3
3,834,776	-	hpt	LU632_RS20135	0.73	-0.1
3,834,782	-	hpt	LU632_RS20135	0.74	+1.6
3,834,812	+	hpt	LU632_RS20135	0.80	+0.1
3,834,834	+	hpt	LU632_RS20135	0.84	-0.4
3,834,919	+				+0.7
3,834,924	+				-0.3
3,834,925	-				+0.7
3,834,966	-				-1.5
3,835,013	-				+1.1
3,835,247	-				+1.4
3,835,247	-				-0.7
3,835,322	+				-1.6
3,835,332	-				+1.7
3,835,395	-				-1.6
3,835,509	+				+0.7
3,835,524	+				+0.1
3,835,549	-				+1.4
3,835,602	+				+1.7
3,835,602	+				+0.4
3,835,603	-				-1.8
3,835,604	+				-0.6
3,835,604	+				+0.8
3,835,604	+				+2.4
3,835,604	+				-0.6
3,835,605	-				-1.1
3,835,605	-				-1.3
3,835,605	-				+0.7
3,835,842	+	cueO	LU632_RS20140	0.21	-0.8
3,835,861	-	cueO	LU632_RS20140	0.22	-1.9
3,835,966	-	cueO	LU632_RS20140	0.28	-0.7
3,836,009	+	cueO	LU632_RS20140	0.31	-0.0
3,836,166	+	cueO	LU632_RS20140	0.41	+1.3
3,836,174	-	cueO	LU632_RS20140	0.41	+1.8
3,836,251	-	cueO	LU632_RS20140	0.46	-0.1
3,836,296	+	cueO	LU632_RS20140	0.49	-2.5
3,836,297	-	cueO	LU632_RS20140	0.49	-1.8
3,836,346	+	cueO	LU632_RS20140	0.52	-1.3
3,836,347	-	cueO	LU632_RS20140	0.52	+0.9
3,836,413	+	cueO	LU632_RS20140	0.56	+0.7
3,836,413	+	cueO	LU632_RS20140	0.56	+4.4
3,836,414	-	cueO	LU632_RS20140	0.56	+0.4
3,836,574	+	cueO	LU632_RS20140	0.66	+0.5
3,836,824	+	cueO	LU632_RS20140	0.81	-0.3
3,836,825	-	cueO	LU632_RS20140	0.81	+1.6
3,836,825	-	cueO	LU632_RS20140	0.81	+1.7
3,836,916	+	cueO	LU632_RS20140	0.87	-1.8
3,836,916	+	cueO	LU632_RS20140	0.87	-1.6
3,836,917	-	cueO	LU632_RS20140	0.87	+1.1
3,836,918	+	cueO	LU632_RS20140	0.87	+0.8
3,836,919	-	cueO	LU632_RS20140	0.87	+0.1
3,836,929	-	cueO	LU632_RS20140	0.88	-2.0
3,836,929	-	cueO	LU632_RS20140	0.88	-0.9
3,836,929	-	cueO	LU632_RS20140	0.88	+1.2
3,836,929	-	cueO	LU632_RS20140	0.88	-1.0
3,837,007	+				+0.5
3,837,221	+				-1.0
3,837,221	+				+1.0
3,837,293	+				+1.4
3,837,312	-				-2.5
3,837,430	-		LU632_RS20145	0.34	-0.6
3,837,524	+		LU632_RS20145	0.61	-1.8
3,837,525	-		LU632_RS20145	0.61	+0.1
3,837,529	-		LU632_RS20145	0.62	-0.9
3,837,529	-		LU632_RS20145	0.62	-0.5
3,837,537	+		LU632_RS20145	0.65	-1.1
3,837,567	+		LU632_RS20145	0.73	+0.1
3,837,567	+		LU632_RS20145	0.73	-1.0
3,837,567	+		LU632_RS20145	0.73	+0.1
3,837,567	+		LU632_RS20145	0.73	-0.5
3,837,568	-		LU632_RS20145	0.74	-0.1
3,837,568	-		LU632_RS20145	0.74	+0.1
3,837,568	-		LU632_RS20145	0.74	-2.0
3,837,658	-				+2.0
3,837,715	+				-0.8
3,837,715	+				-0.2
3,837,716	-				-0.1
3,837,719	+				-1.6
3,837,719	+				-0.9
3,837,720	-				+1.7
3,837,790	+				+3.1
3,837,839	+				-0.3
3,837,845	-				+1.7
3,837,845	-				-1.1
3,837,934	-	speE	LU632_RS20150	0.19	-1.3
3,837,955	+	speE	LU632_RS20150	0.22	-0.9
3,838,038	+	speE	LU632_RS20150	0.31	+0.5
3,838,038	+	speE	LU632_RS20150	0.31	-1.1
3,838,038	+	speE	LU632_RS20150	0.31	+0.6
3,838,038	+	speE	LU632_RS20150	0.31	-0.6
3,838,038	+	speE	LU632_RS20150	0.31	+0.8
3,838,038	+	speE	LU632_RS20150	0.31	+0.5
3,838,038	+	speE	LU632_RS20150	0.31	-1.9
3,838,038	+	speE	LU632_RS20150	0.31	-0.7
3,838,039	-	speE	LU632_RS20150	0.31	+0.9
3,838,039	-	speE	LU632_RS20150	0.31	+0.2
3,838,039	-	speE	LU632_RS20150	0.31	-2.0
3,838,039	-	speE	LU632_RS20150	0.31	-0.7