Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19990

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,802,755	-				-0.2
3,802,846	+				-1.4
3,802,846	+				+2.6
3,802,923	-				-1.5
3,802,923	-				+0.3
3,802,923	-				+2.0
3,803,077	+				+2.2
3,803,077	+				+0.3
3,803,077	+				+0.7
3,803,078	-				+1.3
3,803,078	-				+0.5
3,803,081	+				+0.5
3,803,082	-				+1.9
3,803,082	-				-0.7
3,803,082	-				+1.1
3,803,082	-				+0.3
3,803,168	-		LU632_RS19990	0.23	-0.9
3,803,175	-		LU632_RS19990	0.25	-0.9
3,803,226	-		LU632_RS19990	0.38	+0.3
3,803,402	+		LU632_RS19990	0.82	-0.9
3,803,417	-		LU632_RS19990	0.86	-2.5
3,803,417	-		LU632_RS19990	0.86	-2.4
3,803,516	+				-1.9
3,803,679	+				-1.5
3,803,679	+				+0.1
3,803,680	-				-0.6
3,803,683	-				+1.3
3,803,683	-				+0.1
3,803,691	+		LU632_RS19995	0.11	+1.1
3,803,693	+		LU632_RS19995	0.11	+1.4
3,803,693	+		LU632_RS19995	0.11	+0.5
3,803,693	+		LU632_RS19995	0.11	-0.1
3,803,693	+		LU632_RS19995	0.11	-0.8
3,803,693	+		LU632_RS19995	0.11	+1.6
3,803,693	+		LU632_RS19995	0.11	+0.3
3,803,694	-		LU632_RS19995	0.11	+0.1
3,803,694	-		LU632_RS19995	0.11	+0.7
3,803,694	-		LU632_RS19995	0.11	+1.2
3,803,694	-		LU632_RS19995	0.11	-0.9
3,803,694	-		LU632_RS19995	0.11	+0.1
3,803,694	-		LU632_RS19995	0.11	-3.2
3,803,694	-		LU632_RS19995	0.11	-1.2
3,803,694	-		LU632_RS19995	0.11	+0.1
3,803,696	-		LU632_RS19995	0.11	-0.7
3,803,734	-		LU632_RS19995	0.14	-0.0
3,803,876	+		LU632_RS19995	0.27	-0.4
3,803,877	-		LU632_RS19995	0.27	-0.3
3,803,881	-		LU632_RS19995	0.27	+1.3
3,803,881	-		LU632_RS19995	0.27	-0.6
3,803,881	-		LU632_RS19995	0.27	+0.0
3,803,885	-		LU632_RS19995	0.27	+0.4
3,804,078	+		LU632_RS19995	0.44	+1.0
3,804,079	-		LU632_RS19995	0.44	-1.6
3,804,079	-		LU632_RS19995	0.44	-0.4
3,804,132	+		LU632_RS19995	0.49	-0.3
3,804,310	-		LU632_RS19995	0.64	-0.4
3,804,399	+		LU632_RS19995	0.72	+0.8